View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19291_low_9 (Length: 422)
Name: NF19291_low_9
Description: NF19291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19291_low_9 |
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| [»] scaffold0003 (2 HSPs) |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 355496 - 355308
Alignment:
| Q |
1 |
aaattttgcttaagggtgtaagagtataaaatgtctatatgcttgatctagatgatgtgtcattaagtggtgccaaagtctcgtgttgtc-aagagtgaa |
99 |
Q |
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| T |
355496 |
aaattttgtttaagggtgtaagagtataaaatgtctatatgcttgatctagatgatgtgtcattaagtggtgccaaagtgtcttgttgccaaagagtgaa |
355397 |
T |
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| Q |
100 |
gacttttggttatggtataaatgtcttgaccatgttcactttgacttactaaatagagttatgtccaaggatgtggtagtcggtttacc |
188 |
Q |
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| T |
355396 |
gacttttggttatgacataaacgtcttgaccatgttcacttttacttactaaatatagttatgttcaaggatgtggtagtcggtttacc |
355308 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 248 - 398
Target Start/End: Complemental strand, 355248 - 355096
Alignment:
| Q |
248 |
gagtatgttttaaacttaaaaatgtgatctctaccacacgaactctagaacttctccatctagatctttttggtcccttaaagac--aacgcctaggagg |
345 |
Q |
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| T |
355248 |
gagtatgttttaaacttaaaaatgtgatctctaccacaagaactctagaacttctccacctagatctttttggtcccttaaagacaaaacgcctatgagg |
355149 |
T |
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| Q |
346 |
caactattacggatttgtcattgttgatgactactctagattcacatggacat |
398 |
Q |
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| T |
355148 |
caactattacggatttgtcattgttgatgactactatagattcacatggacat |
355096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 7 - 171
Target Start/End: Original strand, 7049 - 7214
Alignment:
| Q |
7 |
tgcttaagggtgtaagagtataaaat--gtctatatgcttgatctagatgatgtgtcattaagtggtgccaaagtctcgtgttgtcaagagtgaagactt |
104 |
Q |
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| T |
7049 |
tgcttaagggtgtaagagtaaaaaaaacgtgtatatgcttgatctatatgatgtgtcattaagtagtg-ttaagtgttttgttgccaagagtgaggatta |
7147 |
T |
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| Q |
105 |
ttggttatggtataaatgtcttgaccatgttcactttgacttactaaatagagttatgtccaaggat |
171 |
Q |
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| T |
7148 |
tgggttatggcataaacatcttggtcacattcattttgacttacgaaatagagttatgtccaaggat |
7214 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 171
Target Start/End: Original strand, 18914605 - 18914745
Alignment:
| Q |
30 |
aatgtctatatgcttgatctagatgatgtgtcattaagtggtgccaaagtctcgtgttgtcaagagtgaagacttttggttatggtataaatgtcttgac |
129 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||| | |||| | ||||| ||||||||||| | ||||||||| ||| |||||| | |
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| T |
18914605 |
aatgtctatatgcttgatttagatgattcgtcattaagtggtgac-aagtgccttgttgccaagagtgaaggttcttggttatgacatatatgtctcggt |
18914703 |
T |
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| Q |
130 |
catgttcactttgacttactaaatagagttatgtccaaggat |
171 |
Q |
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| T |
18914704 |
cacattcactttgacttacaaaatacagttatgtccatggat |
18914745 |
T |
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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 338 - 392
Target Start/End: Original strand, 8152069 - 8152123
Alignment:
| Q |
338 |
ctaggaggcaactattacggatttgtcattgttgatgactactctagattcacat |
392 |
Q |
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| T |
8152069 |
ctaggaggcaactattgtggatttgtcattgttgatcactactctagattcacat |
8152123 |
T |
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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 344 - 396
Target Start/End: Complemental strand, 18580854 - 18580802
Alignment:
| Q |
344 |
ggcaactattacggatttgtcattgttgatgactactctagattcacatggac |
396 |
Q |
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| T |
18580854 |
ggcaattattacggctttgttattgttgatgactactttagatttacttggac |
18580802 |
T |
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