View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19292_low_12 (Length: 251)
Name: NF19292_low_12
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 12 - 227
Target Start/End: Original strand, 32220132 - 32220347
Alignment:
| Q |
12 |
cagcacagacaactgtggtgaaacaaggtgaaaaggtagcaactgctgcagagggtgttaagaagacagttgtagagcaaattgatagggctgctgatta |
111 |
Q |
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| T |
32220132 |
cagcacagacaactgtggtgaaacaaggtgaaaaggtagcaactgctgcagagggtgttaagaagacagttgtagagcaaattgatagggctgctgatta |
32220231 |
T |
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| Q |
112 |
tgttcattccaaacctgcggagcctgccaaaaccgaagaagcaggtgtgcttgatggtgttaaaaagactgttggaggcttattcaaatgaaatagcatc |
211 |
Q |
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| T |
32220232 |
tgttcattctaaacctgtggagcctgccaaaaccgaagaagctggtgtgcttgatggtgttaaaaagactgttggaggcttattcaaatgaaatagcatc |
32220331 |
T |
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| Q |
212 |
ttgattaattaataag |
227 |
Q |
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|||||||||||||||| |
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| T |
32220332 |
ttgattaattaataag |
32220347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 32218491 - 32218683
Alignment:
| Q |
12 |
cagcacagacaactgtggtgaaacaaggtgaaaaggtagcaactgctgcagagggtgttaagaagacagttgtagagcaaattgatagggctgctgatta |
111 |
Q |
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|||||||||||||||||| | ||||| ||| ||||| ||||||||||||||| | ||||||||| || || ||||| |||| |||||||||||| | |
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| T |
32218491 |
cagcacagacaactgtggggcaacaatctgagaaggtggcaactgctgcagagaaggctaagaagaccgtagttgagcacgttgacagggctgctgatca |
32218590 |
T |
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| Q |
112 |
tgttcattccaaacctgcggagcctgccaaaaccgaagaagcaggtgtgcttgatggtgttaaaaagactgttggaggcttattcaaatgaaa |
204 |
Q |
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| T |
32218591 |
tgttcattccacaccagaggagcctcctaaatccgaagaaggtggtgtgcttgatggtgttaaaaaagctgttggaggcttattcaaatgaaa |
32218683 |
T |
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