View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19292_low_15 (Length: 241)
Name: NF19292_low_15
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 912201 - 912067
Alignment:
| Q |
1 |
tcaatagtgtcaacgaattgaatcaaatacatgtaggttgtatgtgtatccacccacgtacacggttaacaaattgcataacgtgtctttgactccctgt |
100 |
Q |
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| T |
912201 |
tcaatagtgtcaacgaattgaatcaaatacatgtaggttgtatgtgtatccacccacgtacacggttaacaaattgcataacgtgtctttgactccctgt |
912102 |
T |
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| Q |
101 |
gcctgaagaatagatgttccttgtgaaggtgaggt |
135 |
Q |
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| T |
912101 |
gcctgaagaatagatgttccttgtgaaggtgaggt |
912067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 133 - 223
Target Start/End: Complemental strand, 912032 - 911942
Alignment:
| Q |
133 |
ggtattatgattatgaaagataaatagcgatgttgtgaagaagctagggctattttttagctnnnnnnncgaaatgacaaagtctcgtaga |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
912032 |
ggtattatgattatgaaagataaatagcgatgttgtgaagaagctagggctattttttagctaaaaaaacgaaatgacaaagtctcgtaga |
911942 |
T |
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