View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19292_low_2 (Length: 680)
Name: NF19292_low_2
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 468; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Complemental strand, 28111394 - 28110915
Alignment:
| Q |
20 |
gtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccac |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111394 |
gtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccac |
28111295 |
T |
|
| Q |
120 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
28111294 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatccggcacgcagcgatttggaccat |
28111195 |
T |
|
| Q |
220 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagt |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28111194 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagt |
28111095 |
T |
|
| Q |
320 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28111094 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgt |
28110995 |
T |
|
| Q |
420 |
tgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28110994 |
tgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
28110915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 500 - 669
Target Start/End: Complemental strand, 40383213 - 40383045
Alignment:
| Q |
500 |
agacggagagagtatttgatacatttatatattcnnnnnnntaaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
599 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40383213 |
agacggagagagtatttgatacatttatatattcaaaaaaataaattaataatagttatacacaaaaggtacataaaacgatacttcttatgctaaataa |
40383114 |
T |
|
| Q |
600 |
caaagatgcttcctatattagtgataacttgaattattaaaccataaacagacgatactccctatgctac |
669 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
40383113 |
-aaagatgcttcctatgttagtgataacttgaattattaaactataaacagatgatactccctatgctac |
40383045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 33131705 - 33131359
Alignment:
| Q |
20 |
gtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccac |
119 |
Q |
| |
|
|||||||| | ||| |||||| | || ||| ||||||| |||||||||||| ||||||| || |||||| |||||| ||||| | ||| ||||||||| |
|
|
| T |
33131705 |
gtcccggaagagtccgatcatttattcctccattgtgtgacggcaacagcaatttggactaatcttctgagatggcttggttttgactatcatccaccac |
33131606 |
T |
|
| Q |
120 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccat |
219 |
Q |
| |
|
|||| || || ||| |||| |||||||| |||| | | |||||||||||||| || |||||| |||||||| || ||||| | ||| ||||||| || |
|
|
| T |
33131605 |
cggatcttttctatcattggcagtggtggaatgactcggctaggaataagaaggttaggaagggttatcggattatttggcatgcggcggtttggactat |
33131506 |
T |
|
| Q |
220 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagt |
319 |
Q |
| |
|
||||| | |||||||||| ||||| ||||| || ||| | ||| |||| || ||||||||| |||||||||||||| ||| ||||||| |||||| |
|
|
| T |
33131505 |
ctggaaaattagaaatgattttatctttaataactctgtctgcggtgttgatgaagtggtggaggcaattaaggtgttagcttggcggtgggtattgagt |
33131406 |
T |
|
| Q |
320 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatcc |
366 |
Q |
| |
|
|| ||||| |||||||||||||| | | | |||||||| |||||||| |
|
|
| T |
33131405 |
cgcttgaatttgccggtttgtttatttaaagaatggacatggaatcc |
33131359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 393
Target Start/End: Complemental strand, 21867543 - 21867286
Alignment:
| Q |
136 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
235 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21867543 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21867444 |
T |
|
| Q |
236 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
335 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21867443 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21867344 |
T |
|
| Q |
336 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
393 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21867343 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21867286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 393
Target Start/End: Complemental strand, 21923404 - 21923147
Alignment:
| Q |
136 |
ttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttagaaat |
235 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||| |||||||| |||| |||||||| | || |||||||| || ||| ||||||||||| |
|
|
| T |
21923404 |
ttggaagtggtggaatgagttgtcggggaataagaagattcgtaaggggtactggattatctggcatgcggctatttggacaatttggcgagttagaaat |
21923305 |
T |
|
| Q |
236 |
gactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgccgg |
335 |
Q |
| |
|
||||| ||||| || || ||| ||| || ||| | || |||| |||| ||| ||||||||||| ||||||| ||| ||| ||||| || ||||||| |
|
|
| T |
21923304 |
gacttgattttcaataactcttcttgtgcgattaaagaagtggtcgaggctatcaaggtgttagcttggaggtaggtgctgaaccgtttaaacttgccgg |
21923205 |
T |
|
| Q |
336 |
tttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtg |
393 |
Q |
| |
|
||| ||| || |||||||| ||||| || |||| ||| || ||||||||||||| |
|
|
| T |
21923204 |
cgtgtatgttctacgaatggacttggaacccgcaagactgtctgctgcggtaatggtg |
21923147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 242 - 314
Target Start/End: Original strand, 15559086 - 15559158
Alignment:
| Q |
242 |
atttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttt |
314 |
Q |
| |
|
|||||||| |||||||||||||| |||||||| ||||||||||| |||||| ||||||| ||||||||||||| |
|
|
| T |
15559086 |
atttttaataattctccttttggcattgacgagatggtggaggacattaagttgttagcgtggaggtgggttt |
15559158 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 20 - 499
Target Start/End: Original strand, 24836855 - 24837334
Alignment:
| Q |
20 |
gtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccac |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
24836855 |
gtcccggaggtgtcggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggatcggtttcaattattatcgaccac |
24836954 |
T |
|
| Q |
120 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccat |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24836955 |
cggacctgtttcatctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacgcagcgatttggaccat |
24837054 |
T |
|
| Q |
220 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
24837055 |
ctggagagttagaaatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcttggaggtgggttttgagt |
24837154 |
T |
|
| Q |
320 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgt |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
24837155 |
cgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgt |
24837254 |
T |
|
| Q |
420 |
tgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24837255 |
tgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
24837334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 413 - 481
Target Start/End: Original strand, 30871450 - 30871518
Alignment:
| Q |
413 |
tgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgct |
481 |
Q |
| |
|
|||||| ||||||| | ||||||||||| | |||||||||| | ||| |||||||||||||| ||||| |
|
|
| T |
30871450 |
tgggcggtgaggctgttgtatgctgctgttttgctgttttgacagggaatatatgacagcctcgttgct |
30871518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 33 - 499
Target Start/End: Original strand, 34326093 - 34326558
Alignment:
| Q |
33 |
cggatcatctttttctcaattgtgttacggcaacagcagtttggaccaagcttctgtcatggctcggtttcaattattatccaccaccggacctgtttca |
132 |
Q |
| |
|
||||||||||||| ||||| ||| ||| ||||||||||||||| |||||||||||||| |||||||||||||||| | |||| |||||||| ||||||| |
|
|
| T |
34326093 |
cggatcatcttttcctcaactgtattatggcaacagcagtttgaaccaagcttctgtcgtggctcggtttcaattttcatccgccaccggatttgtttca |
34326192 |
T |
|
| Q |
133 |
tctttggaagtggtgggatgagttgtctaggaataagaagattcagaaggggtatcggataatctggcacacagcgatttggaccatctggagagttaga |
232 |
Q |
| |
|
|||||||||||||| |||||||||||| ||||||||||||||| |||||| |||||||| || |||||| | ||| ||||||| || |||||||||||| |
|
|
| T |
34326193 |
tctttggaagtggttggatgagttgtcaaggaataagaagatttggaagggttatcggattatttggcacgccgcggtttggactatttggagagttaga |
34326292 |
T |
|
| Q |
233 |
aatgactttatttttaaaaattctccttttggtattgacgacatggtggaggatattaaggtgttagcatggaggtgggttttgagtcgtttgaagttgc |
332 |
Q |
| |
|
|||||||| ||||| || |||||||||||| | ||||| || ||||||||||| |||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
34326293 |
aatgacttcattttcaacaattctccttttcgcattgatgagatggtggaggacattaaggtgttagcatggaggtgggttttgagccgcttgaa-ttgc |
34326391 |
T |
|
| Q |
333 |
cggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaatggtggatttttgggccttttagatgggcgttgaggctttggta |
432 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||||||| |||| ||||||||||||||||| |||| ||| || ||| |||| | || |||||||||| |
|
|
| T |
34326392 |
cggtttgtttgtactacaaatggacttggaatccacaagagtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggta |
34326491 |
T |
|
| Q |
433 |
tgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgcttctttgcacc |
499 |
Q |
| |
|
|||||||| |||| | ||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34326492 |
tgctgctgttctgatttttcggctaggagtatatgacagcctcgctgctgtcctgcttctttgcacc |
34326558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 2e-57; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 290 - 499
Target Start/End: Original strand, 4028425 - 4028634
Alignment:
| Q |
290 |
aaggtgttagcatggaggtgggttttgagtcgtttgaagttgccggtttgtttgtattatgaatggacgtggaatccacaagcgtgtttggtgcggtaat |
389 |
Q |
| |
|
||||||||||||||||| ||||||||||| || ||||| ||||||||||||||||| || |||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
4028425 |
aaggtgttagcatggagatgggttttgagccgcttgaatttgccggtttgtttgtactacgaatggacttggaatccgcaagagtgtctggtgcggtaat |
4028524 |
T |
|
| Q |
390 |
ggtggatttttgggccttttagatgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
489 |
Q |
| |
|
||||| |||| ||| || ||| ||| | || |||||||||||||||||| |||||| ||||||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
4028525 |
ggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacggcctcactgctgtcctgct |
4028624 |
T |
|
| Q |
490 |
tctttgcacc |
499 |
Q |
| |
|
|||||||||| |
|
|
| T |
4028625 |
tctttgcacc |
4028634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 444 - 489
Target Start/End: Complemental strand, 35052375 - 35052330
Alignment:
| Q |
444 |
tgctgttttggctaggagtatatgacagcctcattgctgtcctgct |
489 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
35052375 |
tgctgttttggctacgagtatatgacagcctcattgttgtcctgct |
35052330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 590 - 640
Target Start/End: Complemental strand, 22793064 - 22793016
Alignment:
| Q |
590 |
tgctaaataacaaagatgcttcctatattagtgataacttgaattattaaa |
640 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
22793064 |
tgctaaataacaaagatgcttcctatgtt--tgaaaacttgaattattaaa |
22793016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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