View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19292_low_3 (Length: 558)
Name: NF19292_low_3
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 276 - 540
Target Start/End: Complemental strand, 33268504 - 33268240
Alignment:
| Q |
276 |
gtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaa |
375 |
Q |
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| T |
33268504 |
gtgtacctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaa |
33268405 |
T |
|
| Q |
376 |
tacttattatctctctcatcttctatatgtgctgcaaatgaaaatcacaaggaggaggaaagtgcaaaggagagnnnnnnntacagcaaagaagaatgtt |
475 |
Q |
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| T |
33268404 |
tacttattatctctctcatcttctatatgtgctgcaaatgaaaatcacaaggaggaggaaagtgcaaaggagagaaaaaaatacagcaaagaagaatctt |
33268305 |
T |
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| Q |
476 |
agatatttaatttctcactttaaagtttataatatgatgatgacataaactctcaataagtgaag |
540 |
Q |
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| T |
33268304 |
agatatttaatttctcactttaaagtttataatatgatgatgacataaactctcaataagtgaag |
33268240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 40 - 208
Target Start/End: Complemental strand, 33268742 - 33268572
Alignment:
| Q |
40 |
cccagaaggaactattaggaaatatataaaattttaggattccatctaactaaacaagacaattaacttgaaaaatcaactaaattaagctttcttatat |
139 |
Q |
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| T |
33268742 |
cccagaaggaactattaggaaatatataaaattttaggattgcatctaactaaacaagacaattaacttgaaaaatcaactaaattaagctttcttatat |
33268643 |
T |
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| Q |
140 |
tcaaagtcaacaaattgagctttcttacagcagaagac--nnnnnnntgtcaaaccaatttcatattaagt |
208 |
Q |
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| T |
33268642 |
tcaaagtcaacaaattgagctttcttacagcagaagacaataaaaaatgtcaaaccaatttcatattaagt |
33268572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 293 - 399
Target Start/End: Original strand, 10034470 - 10034576
Alignment:
| Q |
293 |
tccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatacttattatctctctc |
392 |
Q |
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||||||||||||||| ||||| ||||||||||| ||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10034470 |
tccatcaggttgaatgccatgttcaagacaatatagctcccaacatgaattaccaacctgaattccagcttgtccaatatgaatgcttattatctctctc |
10034569 |
T |
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| Q |
393 |
atcttct |
399 |
Q |
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|| |||| |
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| T |
10034570 |
attttct |
10034576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 280 - 394
Target Start/End: Original strand, 35670650 - 35670764
Alignment:
| Q |
280 |
acctaggcatcaatccatcaggttgaattccatgctcaagacaataaagctcccaacatgaattccctacttgaattccagcttgtccaatatgaatact |
379 |
Q |
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|||||||||||| || ||||| ||||| ||||| || ||||| ||||||||||| || ||||| || ||||| ||||| ||||| || || |||||||| |
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| T |
35670650 |
acctaggcatcatgccgtcaggctgaatgccatgttcgagacagtaaagctcccagcaagaattaccgacttggattccggcttgaccgatgtgaatact |
35670749 |
T |
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| Q |
380 |
tattatctctctcat |
394 |
Q |
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|| || |||||||| |
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| T |
35670750 |
gataatttctctcat |
35670764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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