View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19292_low_4 (Length: 555)
Name: NF19292_low_4
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 17 - 545
Target Start/End: Complemental strand, 46290753 - 46290220
Alignment:
| Q |
17 |
aaatggcttcttccacttccagaatattctcctcgccctctacgctacgacgtcgtttacccattgtaggcgcgttttgcatgctcactttgggactcac |
116 |
Q |
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| T |
46290753 |
aaatggcttcttccacttccagaatcttctcctcgccctctacgctacgacgtcgtttacccattgtaggcgcgttttgcatgctcactttgggactcac |
46290654 |
T |
|
| Q |
117 |
caatctctacacacccttgtattcctctgccctcaaaacagagtgcgtgcgt----tcaatctcaaattctattcattgctatctgtctatatgttttgt |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46290653 |
caatttctacacacccttgtattcctctgccctcaaaacagagtgcgtgcgtgcgttcaatctcaaattctattcatttctatctgtctatatgttttgt |
46290554 |
T |
|
| Q |
213 |
tgaattgcttctgttgttttgtttcagatccaaattgagtagcaggttttcaacaaagagtagcaatttcattagaatggaagggaataccaataacacc |
312 |
Q |
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| T |
46290553 |
tgaattgcttctgttgttttgtttcagatccaaattgagtagcaggttttcaacaaagagtagcaatttcatcagaatggaagggaataccaataacacc |
46290454 |
T |
|
| Q |
313 |
actgttccaagtatcgttgtatatgtaactgttcccaacaaagaagcaggtcgcgtcattgttttaatatcttctaagc-ttatgtatttaattaattta |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| ||||||||||||| |
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| T |
46290453 |
actgttccaagtatcgttgtatatgtaactgttcccaacaaagaagcaggtcgcgtgattgttttaatatcttctaagctttatgtgtttaattaattta |
46290354 |
T |
|
| Q |
412 |
attgtgtgattgtttgtttgatttgatgcatgttattggttttgtgcaggtaagaaattggctgaaagcattgtcacagagaaacttgcagcttgtgtca |
511 |
Q |
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| T |
46290353 |
attgtgtgattgtttgtttgatttgatgcatgttattggttttgtgcaggtaagaaattggctgaaagcattgtcactgagaaacttgcagcttgtgtca |
46290254 |
T |
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| Q |
512 |
gtagggtaccaggtaacaattcttacgccctttg |
545 |
Q |
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| T |
46290253 |
atagggtaccaggtaacaattcttacgccctttg |
46290220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 28 - 527
Target Start/End: Complemental strand, 2528552 - 2528052
Alignment:
| Q |
28 |
tccacttccagaatattctcctcgccctctacgctacgacgtcgtttacccattgtaggcgcgttttgcatgctcactttgggactcaccaatctctaca |
127 |
Q |
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||||||||| |||| ||| ||| |||| |||||| ||||| |||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||| || |
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| T |
2528552 |
tccacttccggaatcttcgtctcctcctccacgctaagacgttgtttacccattgtaggtgcgtttttcatgctcactttgggcctctccaatctcttca |
2528453 |
T |
|
| Q |
128 |
cacccttgtattcctctgccctcaaaacag--agtgcgtgcgttcaatctcaaattctattcattgctatctgtctatatgttttgttgaattgcttctg |
225 |
Q |
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|||||||||||||||||||||||||||||| |||| |||| | | | ||| |||| ||| || ||| ||||||| |||||||||||||||||| |
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| T |
2528452 |
cacccttgtattcctctgccctcaaaacagggagtgtgtgcatgcgtt-----attttattgatttctttctctctatatattttgttgaattgcttctc |
2528358 |
T |
|
| Q |
226 |
ttgttttgtttcagatccaaattgagtagcaggttttcaacaaagagtagcaatttcattagaat-----ggaagggaataccaataacaccactgttcc |
320 |
Q |
| |
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||||||||||||||||| ||||||| |||||||||||||||||||| || |||||||||| ||| ||| ||||||| ||||||||||||||||| |
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| T |
2528357 |
ttgttttgtttcagatctaaattgaatagcaggttttcaacaaagaacagtaatttcattataatataatggacaggaatacaaataacaccactgttcc |
2528258 |
T |
|
| Q |
321 |
aagtatcgttgtatatgtaactgttcccaacaaagaagcaggtcgcgtcattgttttaata--tcttctaagcttatgtatttaattaa-tttaattgtg |
417 |
Q |
| |
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||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||| |||||| || |
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| T |
2528257 |
aagcatccttgtatatgttactgttcccaacaaagaagcaggtcgcgtgattgttttaatatctcttcttggcttatgtatttaattaattttaatgttg |
2528158 |
T |
|
| Q |
418 |
tgattgtttgtttgatttgatgcatgttattggttttgtgcaggtaagaaattggctgaaagcattgtcacagagaaacttgcagcttgtgtcagtaggg |
517 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| |
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| T |
2528157 |
tgattgtttgtttgatttgatgcatgttattgg--ttgtgcaggtaagaaattggctgaaagcattgtcac--agaaacttgcagcttgtgtcaataggg |
2528062 |
T |
|
| Q |
518 |
taccaggtaa |
527 |
Q |
| |
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|||||||||| |
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| T |
2528061 |
taccaggtaa |
2528052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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