View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19292_low_5 (Length: 551)

Name: NF19292_low_5
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19292_low_5
NF19292_low_5
[»] chr4 (2 HSPs)
chr4 (24-319)||(38028754-38029049)
chr4 (372-544)||(38028612-38028784)
[»] chr6 (3 HSPs)
chr6 (20-110)||(31574623-31574713)
chr6 (175-226)||(31574566-31574617)
chr6 (243-287)||(31574520-31574564)
[»] chr3 (2 HSPs)
chr3 (20-110)||(6509418-6509512)
chr3 (243-287)||(6509332-6509376)
[»] chr8 (1 HSPs)
chr8 (325-371)||(15150837-15150883)


Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 24 - 319
Target Start/End: Complemental strand, 38029049 - 38028754
Alignment:
Q  24 tgtgcagttttttgcgttttgtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtttgatttggatttc 123  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  38029049 tgtgcagttttttgcgttttgtgtttgattattggtgagactgttgcggcgattgttgagttcatgcctgtttgcattgtggtcgtttgatttggatttc 38028950  T
Q  124 attgctgaaacagtgtcgttgagggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028949 attgctgaaacagtgtcgttgagggcaatgtgtttgccaatcaattgtgatcaaatgctttgttttgaacatggttagataaagatgagaaaaacagaag 38028850  T
Q  224 acagtggtggtatgcggtggaatcttagtgattggctgcttgcgatggcatcgttttgagatcattggttccttagttgttttgtgtttccattaa 319  Q
    || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||    
T  38028849 acggtggtggtatgcggtagaatcttagtgattggctgcttgcgatggcatcgttttgagatcaatgcttccttacttgttttgtgtttccattaa 38028754  T

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Target: chr4; HSP #2
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 372 - 544
Target Start/End: Complemental strand, 38028784 - 38028612
Alignment:
Q  372 tgctttcttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc 471  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38028784 tgcttccttacttgttttgtgtttccattaaaaactctttgatctgatccatttttagagtggagtgttaataagtctatgaacgacaacaagattgtgc 38028685  T
Q  472 agatattgaaactttttgttgtgctactcttagatagcatcaccatttttccctcaccttgatgtctctgctc 544  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||    
T  38028684 agatattgaaactttttgttgtgctactcttagatagcatcactatttttccctcaccttgatgcctctgctc 38028612  T

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Target: chr6 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 31574713 - 31574623
Alignment:
Q  20 gttctgtgcagttttttgcgttttgtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtt 110  Q
    |||||||||||||||||| |||| ||||||||||||||| |||| ||||| ||||| | ||||||||||||||||||||||||||||||||    
T  31574713 gttctgtgcagttttttgtgtttagtgtttgattattggggagattgttggggcgagtgttgagttcatgcctgtttgcattgtggtcgtt 31574623  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 175 - 226
Target Start/End: Complemental strand, 31574617 - 31574566
Alignment:
Q  175 caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31574617 caaatgctttgttttgaacatggttagataaagatgagaaaaacagaagaca 31574566  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 31574564 - 31574520
Alignment:
Q  243 gaatcttagtgattggctgcttgcgatggcatcgttttgagatca 287  Q
    |||||||||||||||||||||||| ||||||||  ||||||||||    
T  31574564 gaatcttagtgattggctgcttgctatggcatcaatttgagatca 31574520  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 110
Target Start/End: Complemental strand, 6509512 - 6509418
Alignment:
Q  20 gttctgtgcagttttttgcgtttt----gtgtttgattattggtgagaatgttgcggcgattattgagttcatgcctgtttgcattgtggtcgtt 110  Q
    |||||||||||||||||| ||||     |||||||||||||||||||| |||||  |||| | ||||||||||||||||||||||||||||||||    
T  6509512 gttctgtgcagttttttgtgtttatttagtgtttgattattggtgagattgttggagcgactgttgagttcatgcctgtttgcattgtggtcgtt 6509418  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 6509376 - 6509332
Alignment:
Q  243 gaatcttagtgattggctgcttgcgatggcatcgttttgagatca 287  Q
    |||||||||||||||||||||||  ||||||||  ||||||||||    
T  6509376 gaatcttagtgattggctgcttgttatggcatcaatttgagatca 6509332  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 325 - 371
Target Start/End: Original strand, 15150837 - 15150883
Alignment:
Q  325 tagttttcactttccgttatttgttattgcttaattttaatcttaat 371  Q
    |||||||||||||| |||||||||||||||   ||||||||||||||    
T  15150837 tagttttcactttctgttatttgttattgcaatattttaatcttaat 15150883  T

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