View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19292_low_6 (Length: 411)
Name: NF19292_low_6
Description: NF19292
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19292_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 18 - 341
Target Start/End: Complemental strand, 23786896 - 23786572
Alignment:
| Q |
18 |
taactacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaaga |
117 |
Q |
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| T |
23786896 |
taactacgatggtccaaaggataaccctttttaagtatgatgtcattataaaacggcattgctttgtctatctgacttctaagacaaaaaccttctaaga |
23786797 |
T |
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| Q |
118 |
gagcatttaaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactg |
217 |
Q |
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| T |
23786796 |
gagcatttaaagtttcagcagtaggataatgaccggagtcgatgattttattgaataaatagagagctgaagacatgttacctcttagagagtgacactg |
23786697 |
T |
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| Q |
218 |
gatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcaaatttggataattcatcatttaattctttgac-aggttaaaaatagtg |
316 |
Q |
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| T |
23786696 |
gatgaggataatgaaagtatgagtgtctggatctggacgtacaggaccatcgaatttggataattcatcatctaattctttgacaaggataaaaatagtg |
23786597 |
T |
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| Q |
317 |
tcgaaagagtgcattttagcaagtt |
341 |
Q |
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| T |
23786596 |
tcgaaagagtgcattttagcaagtt |
23786572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 40 - 227
Target Start/End: Complemental strand, 47568987 - 47568800
Alignment:
| Q |
40 |
aaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcatttaaagtttcagcagt |
139 |
Q |
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| T |
47568987 |
aaccgtttttaagtatgatgtcattgtaaaacagcattgctttgtcagtctgtcgtctgcgacaaaaaccaactaaaagatgattcaaagtttgtgtagt |
47568888 |
T |
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| Q |
140 |
aggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacctcttagagagtgacactggatgaggata |
227 |
Q |
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| T |
47568887 |
aggattatcaccggtgtcgatgattttatggaataaagagatatctgaagacattttaccttgtctagagtgacactggatgaggata |
47568800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 342 - 394
Target Start/End: Complemental strand, 23786540 - 23786488
Alignment:
| Q |
342 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgag |
394 |
Q |
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| T |
23786540 |
acaaacacccatggaaagcatgtttttgaagaatttaacagcttcatcgtgag |
23786488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 28238926 - 28238753
Alignment:
| Q |
26 |
atggtccaaaggataaccctttttaagtatgatgtcattataaaacaacattgctttgtctatctgacttctaagacaaaaaccttctaagagagcattt |
125 |
Q |
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||||||||| || ||||||||||||||||||||| ||| ||||| |||||| |||| |||||| |||| ||||||||| | ||| |||| || |
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| T |
28238926 |
atggtccaactgaaaaccctttttaagtatgatgtaattgtaaaagtgcattgccttgtgaatctgatgtctatcacaaaaaccatataaaagagaatac |
28238827 |
T |
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| Q |
126 |
aaagtttcagcagtaggataatgaccggagtcgatggttttattgaattaatagagagctgaagacatgttacc |
199 |
Q |
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||||| |||||||||||| |||||||| ||||||| | |||| ||| | ||| |||||||||||||||||| |
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| T |
28238826 |
aaagtaccagcagtaggatgatgaccggtgtcgatgatcttatggaaaagagagatagctgaagacatgttacc |
28238753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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