View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19293_high_2 (Length: 420)
Name: NF19293_high_2
Description: NF19293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19293_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 45514449 - 45514059
Alignment:
| Q |
12 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
111 |
Q |
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| T |
45514449 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
45514350 |
T |
|
| Q |
112 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaaga |
211 |
Q |
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| T |
45514349 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaaga |
45514250 |
T |
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| Q |
212 |
gaaagtcagaggtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagagg |
311 |
Q |
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| T |
45514249 |
gaaagtcagaggtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatccaagagg |
45514150 |
T |
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| Q |
312 |
ttgggaagggatgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggttcaaacactgatggtagagtg |
402 |
Q |
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| T |
45514149 |
ttgggaagggatgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggatcaaacactgatggtagagtg |
45514059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 12 - 402
Target Start/End: Complemental strand, 43699647 - 43699257
Alignment:
| Q |
12 |
attctacaaaaactgtgaaatatacggcactgtcgacttcatctacggcaacgctgccgctgtatttcaagactgcatggtttatgcacgctatagacag |
111 |
Q |
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|||||||||||||||||||||||| || || ||||||||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||||| |
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| T |
43699647 |
attctacaaaaactgtgaaatatatggtaccgtcgacttcatcttcggcaacgctgcagctgtatttcaagactgtatggtttatgcacgctatcgacag |
43699548 |
T |
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| Q |
112 |
tttgtgacattcaccgcacagtcacgtgaaagtccatatgaaaaaacaggtttcacattccaacgttgtaaattcacaatgtcacctgaagatgagaaga |
211 |
Q |
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|| ||| |||||||||||| ||||||| || ||||| |||||||||||||||||||||||||| |||||| ||||| ||||||||||||||||| | |
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| T |
43699547 |
ttcgtggtattcaccgcacaatcacgtggaaatccatctgaaaaaacaggtttcacattccaacattgtaatttcaccatgtcacctgaagatgaaggca |
43699448 |
T |
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| Q |
212 |
gaaagtcagaggtgcatgcaacattaggtcgtccttggagggcatattcaacagttgctatattgcattgtttcatagattcaatggttgatcctagagg |
311 |
Q |
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||| |||||||||| || |||||| ||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| | || ||| ||||||| |
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| T |
43699447 |
aaaaatcagaggtgcgtggaacattgggtcgtccttggagggcatattccacagtggctatattgcaatgtttcatagattcctttgtggatactagagg |
43699348 |
T |
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| Q |
312 |
ttgggaagggatgtcaggtctggccactgataaagttacttatgttgagtttgagaatgttggacctggttcaaacactgatggtagagtg |
402 |
Q |
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||||||| |||| || | ||| |||||| ||||||||||| ||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
43699347 |
ttgggaacagatggagggacaacccaatgataaggttacttatgtggagtttgagaatgttggacctggatctaacactgatggtagagtg |
43699257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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