View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19293_low_1 (Length: 740)
Name: NF19293_low_1
Description: NF19293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19293_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 128 - 723
Target Start/End: Original strand, 25377736 - 25378333
Alignment:
| Q |
128 |
taacacttcttggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
227 |
Q |
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| T |
25377736 |
taacacttcttggcatagttgtttgaagaaattgaagtggtgatcaaattaatccatgctgtttagagtagtataatgattactcatgtttggtctacaa |
25377835 |
T |
|
| Q |
228 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
327 |
Q |
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| T |
25377836 |
tagttataagcttcattgttccgccttaagtcacaagcgagtaattcttctattacttgaagattgaatgaagttagggcctagtcggtcttctcctttc |
25377935 |
T |
|
| Q |
328 |
tgctttaattaccaaaaaccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccg |
427 |
Q |
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| T |
25377936 |
tgctttaattaccaaaa-ccgaccttaaataaaccacctctctatctctctgttttaaattcaaccactccggctatctcttctatgtgatttttcaccg |
25378034 |
T |
|
| Q |
428 |
cttctctgtcctggttttcgatttttctgtgtttttaactattgcggacgctaaatgccggtggaacactaataaggtctttttcaaacatattatattt |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25378035 |
cttctctgtcctggttttcgatttttctgtgtttttaactattgcggacgctaaatgccgttggaacactaataaggtctttttcaaacatattatattg |
25378134 |
T |
|
| Q |
528 |
ctgacttttgtacttttgtttatcatgtttacttaatggttgtttgatctaccctttccaatttattgcttatggtatggcgaggtgcttatcttctact |
627 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || |
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| T |
25378135 |
ctgacttttgtacttttgtttatcatgtttacttaatgattgtttgatctaccctttccaatttattgcttacggtatggcaaggtgcttatcttctgct |
25378234 |
T |
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| Q |
628 |
tacattatcattcttaattaatttaatttctcaggccaacctg---catggatctttttgatgatattctacttgaagctcctgctgcacctggttagt |
723 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
25378235 |
tacattatcattcttaattaatttaatttctcaggccaacctgcctcatggatctttttgatgatattctacttgaagttcctcctgcacctggttagt |
25378333 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 25377637 - 25377705
Alignment:
| Q |
56 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttttgtc |
124 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25377637 |
ttaaaacattttaccaatgtatagtctgcattaaatccatcattctcatttacatgctttgtttttgtc |
25377705 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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