View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19293_low_5 (Length: 251)
Name: NF19293_low_5
Description: NF19293
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19293_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 1034754 - 1034520
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
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| T |
1034754 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
1034655 |
T |
|
| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
200 |
Q |
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| T |
1034654 |
ggatatttgtgtaaattttatattagctgggagagacacttcttcagttgctttgagctggtttttctggttggttgatcagaatcatgaagttgaggag |
1034555 |
T |
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| Q |
201 |
aaaatattagaagaaatttgcagggtggtggatat |
235 |
Q |
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| T |
1034554 |
aaaatattagaagaaatttgcagggtggtggatat |
1034520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 13897697 - 13897472
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13897697 |
ctttgcaaaatgaagacaataaggaaaaatcggatttgttaactgtgttcatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
13897598 |
T |
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| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
200 |
Q |
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| T |
13897597 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggag |
13897498 |
T |
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| Q |
201 |
aaaatattagaagaaatttgcagggt |
226 |
Q |
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| T |
13897497 |
aaaatattagaagagatttgcagggt |
13897472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 12 - 226
Target Start/End: Original strand, 13887524 - 13887738
Alignment:
| Q |
12 |
gaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtg |
111 |
Q |
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||||| |||||| |||||| |||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||||| ||||||||||| |||| |
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| T |
13887524 |
gaagatgataagcgaaaatcagatttgttaactgtgtttatgaagcttaaagatgagaatggaaaggcttattcagataagttcttgagggatatatgtg |
13887623 |
T |
|
| Q |
112 |
taaatttcatattagctgggagagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattaga |
211 |
Q |
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||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||| |
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| T |
13887624 |
taagttttatattagctgggagagacacttcttcagttgctttaagctggtttttctggttacttaatcagaatcatgaagtggaggagaaaatattaga |
13887723 |
T |
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| Q |
212 |
agaaatttgcagggt |
226 |
Q |
| |
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||| ||||||||||| |
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| T |
13887724 |
agagatttgcagggt |
13887738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 7295729 - 7295502
Alignment:
| Q |
1 |
ctttgcaaaatgaagacgataaggaaaaatcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgag |
100 |
Q |
| |
|
||||||||||| |||| |||||||||||||| |||||||||||||||| |||||||||| |||||||||||||| || || ||||||||| | |||| |
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| T |
7295729 |
ctttgcaaaattaagatgataaggaaaaatcaaatttgttaactgtgttaatgaggcttacggatgagaatggaatttcatactcagataag--tgtgag |
7295632 |
T |
|
| Q |
101 |
ggatatttgtgtaaatttcatattagctgggagagacacttcttc---agttgctttaagctggtttttctggttggttgatcagaatcatgaagttgag |
197 |
Q |
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|||||| ||| | |||||||||||||| ||||||||||||||||| ||||||||| || || ||||||||||| ||||||| ||| ||||| | ||| |
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| T |
7295631 |
ggatatatgtttgaatttcatattagccgggagagacacttcttctttagttgctttgaggcggcttttctggttgcttgatcataataatgaaatggag |
7295532 |
T |
|
| Q |
198 |
gagaaaatattagaagaaatttgcagggtggtg |
230 |
Q |
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|| |||| ||| ||| ||||||||||||||| |
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| T |
7295531 |
gaaaaaa---tagtagagatttgcagggtggtg |
7295502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 7291781 - 7291699
Alignment:
| Q |
10 |
atgaagacgataaggaaaaa--tcggatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataa |
91 |
Q |
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||||||| |||||||||||| || |||| || || ||||||||||||||||||||||||||||| ||| || ||||||||||| |
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| T |
7291781 |
atgaagatgataaggaaaaaaatcagattcgtaaa-tgtgtttatgaggcttaaggatgagaatgaaaattcatattcagataa |
7291699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 33 - 230
Target Start/End: Complemental strand, 28667002 - 28666805
Alignment:
| Q |
33 |
gatttgttaactgtgtttatgaggcttaaggatgagaatggaaagtcttattcagataagtttttgagggatatttgtgtaaatttcatattagctggga |
132 |
Q |
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|||||||||||||| ||||||| | | |||||||||||||||| ||||||||||||||||| |||||||||| ||||| ||||| ||| ||||||||| |
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| T |
28667002 |
gatttgttaactgtttttatgaagatgaaggatgagaatggaagtgcttattcagataagtttctgagggatatatgtgtgaattttatactagctggga |
28666903 |
T |
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| Q |
133 |
gagacacttcttcagttgctttaagctggtttttctggttggttgatcagaatcatgaagttgaggagaaaatattagaagaaatttgcagggtggtg |
230 |
Q |
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||||||||||||| || ||||| || |||||||| ||||| ||||||||||||||||||| |||||||| ||||||||||| || |||| ||||||| |
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| T |
28666902 |
gagacacttcttctgtggctttgagttggtttttttggttacttgatcagaatcatgaagtggaggagaagatattagaagagatatgcaaggtggtg |
28666805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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