View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19294_low_2 (Length: 273)

Name: NF19294_low_2
Description: NF19294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19294_low_2
NF19294_low_2
[»] chr6 (13 HSPs)
chr6 (10-257)||(31213829-31214076)
chr6 (9-257)||(31229378-31229626)
chr6 (94-257)||(30954932-30955095)
chr6 (46-257)||(30985947-30986158)
chr6 (46-257)||(30992111-30992322)
chr6 (96-257)||(30960679-30960840)
chr6 (92-213)||(31224180-31224301)
chr6 (93-257)||(30944671-30944835)
chr6 (106-213)||(31145790-31145897)
chr6 (106-213)||(31172103-31172210)
chr6 (106-213)||(31189848-31189955)
chr6 (106-213)||(31201655-31201762)
chr6 (133-211)||(31131578-31131656)
[»] chr8 (1 HSPs)
chr8 (27-77)||(44035257-44035307)


Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 10 - 257
Target Start/End: Original strand, 31213829 - 31214076
Alignment:
Q  10 aagaatatgaccaacaacttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaaga 109  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||    
T  31213829 aagaaaatgactaacaacttcgaagtcaaactaggacaaggtggttatggtacagtatacaaaggaaagctactcaatgaccgccttgtggccgtgaaga 31213928  T
Q  110 tattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggattttg 209  Q
    |||| || |||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||||| ||||||||||||||||    
T  31213929 tattaaacgcatccaaaggaaaaggtgaagaatttatgaacgaggtttctagcataacaaaaacctctcacgttaatgttgttgcccttcttggattttg 31214028  T
Q  210 ttttaacggtcgcaataaagctttgatctatgaattcatgtccaatgg 257  Q
    |||| |||||||||| |||||  ||||||||||||||||||| |||||    
T  31214029 ttttgacggtcgcaaaaaagccctgatctatgaattcatgtctaatgg 31214076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 9 - 257
Target Start/End: Original strand, 31229378 - 31229626
Alignment:
Q  9 gaagaatatgaccaacaacttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaag 108  Q
    |||||| ||| ||||||||||| |||||||| |||||||||| ||||||| ||| |||||| ||||||| ||| |||||||  | | ||||||||| |||    
T  31229378 gaagaaaatggccaacaacttcaaagtcaaattaggacaaggcggttatgttacagtatacgaaggaaagctagtcaatgattgccctgtggccgtaaag 31229477  T
Q  109 atattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggatttt 208  Q
    ||| ||||    || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |  |||||||||||||||    
T  31229478 atactgaaaaagtctaaaggaaatggtgatgaatttatgaatgaggtttctagcattactaaaacctctcacgttaatgttttcgcccttcttggatttt 31229577  T
Q  209 gttttaacggtcgcaataaagctttgatctatgaattcatgtccaatgg 257  Q
    ||||| | || || || |||||| | || |||||||| ||||| |||||    
T  31229578 gttttgaaggacggaaaaaagctctcatttatgaattaatgtcgaatgg 31229626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 94 - 257
Target Start/End: Original strand, 30954932 - 30955095
Alignment:
Q  94 cttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgttt 193  Q
    |||||||| ||||||||  | |||||||| |||||||| |||||||||||||| ||||||||| |||| ||||||| |||||| || || |||||||||     
T  30954932 cttgtggcagtgaagatgctaaatgcatcaaaaggaaatggtgaagaatttattaatgaggttactagtattactagaacctcacatgttaatgttgtta 30955031  T
Q  194 cccttcttggattttgttttaacggtcgcaataaagctttgatctatgaattcatgtccaatgg 257  Q
    |||||||||||||||||||| | ||| ||||||||||| | || |||||||| ||||| |||||    
T  30955032 cccttcttggattttgttttgaaggttgcaataaagctctcatatatgaatttatgtctaatgg 30955095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 30985947 - 30986158
Alignment:
Q  46 caaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaattta 145  Q
    ||||| |||| |||| |||| |||||||||||  || ||||||    |||||| || ||||||||||| |||||||| |||||||| |||||||| ||||    
T  30985947 caagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagacttta 30986046  T
Q  146 tgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggattttgttttaacggtcgcaataaagctttgatctatgaatt 245  Q
    | ||||||||| |||| ||||||| |||||| || || |||||||||  ||||||||||||||||||| | ||| | ||||||||| | || ||||||||    
T  30986047 ttaatgaggttgctagtattactagaacctcacatgttaatgttgttaaccttcttggattttgttttgaaggttgtaataaagctctcatatatgaatt 30986146  T
Q  246 catgtccaatgg 257  Q
     ||||| |||||    
T  30986147 tatgtctaatgg 30986158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 46 - 257
Target Start/End: Original strand, 30992111 - 30992322
Alignment:
Q  46 caaggtggttatggtacggtatacaaaggaaatctactcaatgaccgtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaattta 145  Q
    ||||| |||| |||| |||| |||||||||||  || ||||||    |||||| || ||||||||||| |||||||| |||||||| |||||||| ||||    
T  30992111 caagggggttttggtgcggtgtacaaaggaaagttattcaatggttctcttgtagcagtgaagatattaaatgcatcaaaaggaaatggtgaagacttta 30992210  T
Q  146 tgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggattttgttttaacggtcgcaataaagctttgatctatgaatt 245  Q
    | ||||||||| |||| ||||||| |||||| || || |||||||||  ||||||||||||||||||| | ||| | ||||||||| | || ||||||||    
T  30992211 ttaatgaggttgctagtattactagaacctcacatgttaatgttgttaaccttcttggattttgttttgaaggttgtaataaagctctcatatatgaatt 30992310  T
Q  246 catgtccaatgg 257  Q
     ||||| |||||    
T  30992311 tatgtctaatgg 30992322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 96 - 257
Target Start/End: Original strand, 30960679 - 30960840
Alignment:
Q  96 tgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcc 195  Q
    |||||| |||||||| ||||||||||| |||||||| |||||||||||||| || |||||| |||| ||||||| |||||| || || ||||||||  ||    
T  30960679 tgtggcagtgaagattttgaatgcatcaaaaggaaacggtgaagaatttattaacgaggttgctagtattactagaacctcacatgttaatgttgtcacc 30960778  T
Q  196 cttcttggattttgttttaacggtcgcaataaagctttgatctatgaattcatgtccaatgg 257  Q
    |||||||||||||||||| | || || || |||||| |  | |||||||| |||||||||||    
T  30960779 cttcttggattttgttttgaaggccgtaaaaaagctcttgtatatgaatttatgtccaatgg 30960840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 92 - 213
Target Start/End: Original strand, 31224180 - 31224301
Alignment:
Q  92 gtcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgt 191  Q
    |||||||||| |||||||||||||||| ||| |||||||| ||||| |||||||| ||||||||| |||| ||| ||| ||||||||| || ||||||||    
T  31224180 gtcttgtggcagtgaagatattgaatgtatcaaaaggaaatggtgaggaatttattaatgaggttgctagtatttctagaacctctcatgttaatgttgt 31224279  T
Q  192 ttcccttcttggattttgtttt 213  Q
      ||||||||||||||||||||    
T  31224280 cacccttcttggattttgtttt 31224301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 30944671 - 30944835
Alignment:
Q  93 tcttgtggccgtgaagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtt 192  Q
    |||||| || |||||||| ||||||||||| |||||||  |||||||| ||||| ||||||||| |||| ||||||| |||||| || || |||||||||    
T  30944671 tcttgtagcagtgaagattttgaatgcatcgaaaggaattggtgaagactttattaatgaggttactagtattactagaacctcacatgttaatgttgtt 30944770  T
Q  193 tcccttcttggattttgttttaacggtcgcaataaagctttgatctatgaattcatgtccaatgg 257  Q
     |||||||||||||||||||| | ||| | ||||||||| |  | |||||||| ||||| |||||    
T  30944771 acccttcttggattttgttttgaaggttgtaataaagctctcgtatatgaatttatgtctaatgg 30944835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 31145897 - 31145790
Alignment:
Q  106 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggat 205  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||||| || ||||||| |||||| || || || |||||| ||||||||||||    
T  31145897 aagatattgaattcatccaaaggaaacggtgaagaatttattaatgaggtttccagtattactagaacctcacatgttaacgttgttacccttcttggat 31145798  T
Q  206 tttgtttt 213  Q
    ||||||||    
T  31145797 tttgtttt 31145790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 31172210 - 31172103
Alignment:
Q  106 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggat 205  Q
    |||||||||||| ||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||||| || || || |||||| ||||||||||||    
T  31172210 aagatattgaatccatccaaaggaaacggtgaagaatttattaatgaggtttctagtatttctagaacctcacatgttaacgttgttacccttcttggat 31172111  T
Q  206 tttgtttt 213  Q
    ||||||||    
T  31172110 tttgtttt 31172103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 31189955 - 31189848
Alignment:
Q  106 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggat 205  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||| ||||||| |||||| || || ||||||||  ||||||||||||    
T  31189955 aagatattgaattcatccaaaggaaacggtgaagaatttattaatgaagtttctagtattactagaacctcacatgttaatgttgtcacccttcttggat 31189856  T
Q  206 tttgtttt 213  Q
    ||||||||    
T  31189855 tttgtttt 31189848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 106 - 213
Target Start/End: Complemental strand, 31201762 - 31201655
Alignment:
Q  106 aagatattgaatgcatccaaaggaaaaggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggat 205  Q
    |||||||||||| ||||||||||||| |||||||||||||| ||||||||| |||| ||||||| |||||| || || ||||||||  ||||||||||||    
T  31201762 aagatattgaattcatccaaaggaaatggtgaagaatttattaatgaggttgctagtattactagaacctcacatgttaatgttgtcacccttcttggat 31201663  T
Q  206 tttgtttt 213  Q
    ||||||||    
T  31201662 tttgtttt 31201655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 211
Target Start/End: Complemental strand, 31131656 - 31131578
Alignment:
Q  133 ggtgaagaatttatgaatgaggtttctagcattactaaaacctctcacgtgaatgttgtttcccttcttggattttgtt 211  Q
    |||||||||||||| ||||||||| |||| ||| ||| |||||| || || ||| ||||  ||||||||||||||||||    
T  31131656 ggtgaagaatttattaatgaggttgctagtatttctagaacctcgcatgttaatattgtcacccttcttggattttgtt 31131578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 44035257 - 44035307
Alignment:
Q  27 cttcgaagtcaaactaggacaaggtggttatggtacggtatacaaaggaaa 77  Q
    |||| |||| ||||||||| |||||||||||||| | ||||||||||||||    
T  44035257 cttcaaagttaaactaggagaaggtggttatggttctgtatacaaaggaaa 44035307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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