View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19294_low_3 (Length: 253)

Name: NF19294_low_3
Description: NF19294
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19294_low_3
NF19294_low_3
[»] chr4 (15 HSPs)
chr4 (1-239)||(51056794-51057032)
chr4 (100-172)||(14577505-14577577)
chr4 (104-172)||(36071135-36071203)
chr4 (100-168)||(37921741-37921809)
chr4 (101-169)||(49473639-49473707)
chr4 (98-169)||(24664987-24665058)
chr4 (102-169)||(43722759-43722826)
chr4 (100-170)||(4963351-4963420)
chr4 (103-169)||(7230274-7230340)
chr4 (98-152)||(31041712-31041766)
chr4 (101-162)||(897426-897487)
chr4 (120-169)||(21465605-21465654)
chr4 (100-169)||(23304014-23304083)
chr4 (100-164)||(11829628-11829692)
chr4 (108-168)||(37193244-37193304)
[»] chr6 (7 HSPs)
chr6 (98-168)||(22792936-22793006)
chr6 (99-169)||(9111041-9111111)
chr6 (103-169)||(28592688-28592754)
chr6 (98-169)||(9665304-9665375)
chr6 (100-169)||(8569703-8569772)
chr6 (100-169)||(29740476-29740545)
chr6 (109-169)||(9333725-9333785)
[»] scaffold0005 (1 HSPs)
scaffold0005 (100-172)||(239798-239870)
[»] chr2 (13 HSPs)
chr2 (98-169)||(21482515-21482586)
chr2 (103-169)||(12124539-12124605)
chr2 (100-169)||(20455885-20455954)
chr2 (98-169)||(4238753-4238824)
chr2 (104-163)||(5137807-5137866)
chr2 (116-167)||(15770786-15770837)
chr2 (100-171)||(29544619-29544690)
chr2 (102-164)||(24593375-24593437)
chr2 (123-161)||(41813005-41813043)
chr2 (100-173)||(41187455-41187528)
chr2 (108-169)||(44026602-44026663)
chr2 (100-164)||(28771581-28771645)
chr2 (103-163)||(44488011-44488071)
[»] chr8 (9 HSPs)
chr8 (98-172)||(21557424-21557498)
chr8 (103-170)||(32115407-32115474)
chr8 (103-169)||(27750905-27750971)
chr8 (103-171)||(8072719-8072788)
chr8 (100-169)||(27587215-27587284)
chr8 (120-169)||(35149278-35149327)
chr8 (105-169)||(19778059-19778123)
chr8 (101-169)||(29499765-29499833)
chr8 (99-163)||(30623293-30623357)
[»] chr1 (10 HSPs)
chr1 (100-166)||(9413795-9413861)
chr1 (100-170)||(25532966-25533036)
chr1 (98-168)||(2613717-2613787)
chr1 (100-165)||(21638111-21638176)
chr1 (100-169)||(38448864-38448933)
chr1 (100-169)||(41884803-41884872)
chr1 (104-169)||(45481487-45481552)
chr1 (103-163)||(45652120-45652181)
chr1 (98-170)||(17139513-17139585)
chr1 (123-171)||(31890770-31890818)
[»] chr7 (12 HSPs)
chr7 (100-169)||(40752837-40752906)
chr7 (98-165)||(7908591-7908658)
chr7 (98-145)||(27833397-27833444)
chr7 (102-169)||(33473521-33473588)
chr7 (100-163)||(46987086-46987149)
chr7 (98-164)||(41029271-41029337)
chr7 (98-170)||(145510-145583)
chr7 (99-163)||(1046556-1046620)
chr7 (105-169)||(8227343-8227407)
chr7 (102-170)||(10244720-10244788)
chr7 (109-169)||(20205816-20205876)
chr7 (100-164)||(38858170-38858234)
[»] chr5 (10 HSPs)
chr5 (100-173)||(40715947-40716020)
chr5 (100-164)||(26409252-26409316)
chr5 (105-164)||(3955545-3955604)
chr5 (102-169)||(37932324-37932391)
chr5 (124-165)||(5243852-5243893)
chr5 (100-169)||(6624770-6624839)
chr5 (100-141)||(26655486-26655527)
chr5 (100-141)||(26927071-26927112)
chr5 (103-163)||(4763187-4763247)
chr5 (98-170)||(39914894-39914965)
[»] chr3 (7 HSPs)
chr3 (98-169)||(7464487-7464558)
chr3 (100-169)||(28130932-28131001)
chr3 (100-169)||(44579630-44579699)
chr3 (100-169)||(52904141-52904210)
chr3 (102-162)||(28266717-28266777)
chr3 (101-169)||(35191816-35191884)
chr3 (105-169)||(53633620-53633684)
[»] scaffold0262 (1 HSPs)
scaffold0262 (101-170)||(15929-15998)
[»] scaffold0354 (1 HSPs)
scaffold0354 (100-152)||(7218-7270)


Alignment Details
Target: chr4 (Bit Score: 154; Significance: 9e-82; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 51057032 - 51056794
Alignment:
Q  1 tcaacaaaaaatatgtttgttaaaataacaatccttatttcctctaaaataaaagtccttatttttttagactttagtcactttagannnnnnnnnng-t 99  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||          | |    
T  51057032 tcaacaaaaaatatgtttgttaaaataacaatccttatttcctctaaaataaaagtccttatttttt-acactttagtcactttagattttttttttggt 51056934  T
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggactttagtcaatttagatgattaaactaagat 199  Q
    |||||||| ||  || |||||||||||||||||||| ||||||||  |||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  51056933 cggggttcaaattccagacgttacatatattatccgctgtccttaacaattgaactaaactcacgagaactttagtcagtttagatgattaaactaagat 51056834  T
Q  200 tgagactaacaatattatttaagaatttatataattattg 239  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  51056833 tgagactaacaatattatttaagaatttatataattattg 51056794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 172
Target Start/End: Original strand, 14577505 - 14577577
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttt 172  Q
    ||||||| |||| |||||| || |||||||||| | |||||||||| || ||| |||||||||||||||||||    
T  14577505 cggggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggacttt 14577577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 104 - 172
Target Start/End: Complemental strand, 36071203 - 36071135
Alignment:
Q  104 gttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttt 172  Q
    |||||||||||| || ||||||||||||| | |||||||||| || ||| |||||||||| ||||||||    
T  36071203 gttcgaaccccgaaccttacatatattatgcattgtccttaccaactgacctaaactcacaaggacttt 36071135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 37921809 - 37921741
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgagga 168  Q
    ||||||| ||| ||||||| || |||||||||| | ||||||||||||| ||| ||||||||| |||||    
T  37921809 cggggtttgaatcccggaccttgcatatattatgcattgtccttactaactgagctaaactcaggagga 37921741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 49473707 - 49473639
Alignment:
Q  101 ggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||||||| || |||||||||| | |||||||||| || ||  |||| |||||||||||    
T  49473707 ggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgggctaagctcacgaggac 49473639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 24664987 - 24665058
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||||||| || |||||||||| | || ||| ||| || ||| |||| |||||||||||    
T  24664987 gtcggggttcgaaccccggaccttgcatatattatgcattctccataccaactgagctaagctcacgaggac 24665058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 43722826 - 43722759
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||| ||||||||||| ||||||||||||| | |||||| ||| || |||  |||||||||||||||    
T  43722826 gggtttgaaccccggaccttacatatattatgcattgtccataccaactgagttaaactcacgaggac 43722759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 170
Target Start/End: Original strand, 4963351 - 4963420
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    |||||||||||||||| || |||||||| ||||  ||||||| ||  |||||| |||||||||||||||||    
T  4963351 cggggttcgaaccccg-accttacatattttatgtgttgtccatatcaattgagctaaactcacgaggact 4963420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 7230340 - 7230274
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||| ||||||||||| || |||||||||| | |||||||||| || ||| |||| |||||||||||    
T  7230340 ggtttgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggac 7230274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 152
Target Start/End: Original strand, 31041712 - 31041766
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattga 152  Q
    ||||| ||||||||||||||| || |||||||||| | |||||| ||||||||||    
T  31041712 gtcggagttcgaaccccggacattgcatatattatacattgtccatactaattga 31041766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 162
Target Start/End: Complemental strand, 897487 - 897426
Alignment:
Q  101 ggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactca 162  Q
    |||||| ||||||||||| ||||||||||||| | |||||| ||| || ||| |||||||||    
T  897487 ggggtttgaaccccggaccttacatatattatacattgtccataccaactgagctaaactca 897426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Complemental strand, 21465654 - 21465605
Alignment:
Q  120 ttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||| | ||||||||||||| |||  |||||||||||||||    
T  21465654 ttacatatattatgcattgtccttactaactgagttaaactcacgaggac 21465605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 23304014 - 23304083
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||| ||||||||| || |||||||||| | |||||| ||| || ||| |||| |||||||||||    
T  23304014 cggggttcgcaccccggaccttgcatatattatgccttgtccctaccaactgagctaagctcacgaggac 23304083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 11829692 - 11829628
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    |||||||||| ||||| || || |||||||||| | ||||||||||  ||| |||||||||||||    
T  11829692 cggggttcgagccccgaacctttcatatattatacattgtccttacctattaaactaaactcacg 11829628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 108 - 168
Target Start/End: Complemental strand, 37193304 - 37193244
Alignment:
Q  108 gaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgagga 168  Q
    ||||||||||| || |||||||||| | |||||| |||||| ||| |||| ||||||||||    
T  37193304 gaaccccggaccttgcatatattatacattgtccatactaactgagctaagctcacgagga 37193244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 22792936 - 22793006
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgagga 168  Q
    ||||||||| ||||||||||| ||||||||||||| |||||||||||| || ||| |||| || |||||||    
T  22792936 gtcggggtttgaaccccggaccttacatatattattcgttgtccttaccaactgagctaagcttacgagga 22793006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 169
Target Start/End: Complemental strand, 9111111 - 9111041
Alignment:
Q  99 tcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||||||||| || |||||||||| | |||| | ||| || |||||||| |||||||||||    
T  9111111 tcggggttcgaaccccggaccttgcatatattatgcattgttcataccaactgaactaagctcacgaggac 9111041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 28592688 - 28592754
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||| ||| ||||||||||||| | ||||| || | ||||||||||| |||||||||||    
T  28592688 ggttcgaaccccagaccttacatatattatgcattgtctttgccaattgaactaagctcacgaggac 28592754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 9665375 - 9665304
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||| ||||||||||||||| |||||||||||||   |||| | ||| ||||||  |||||||||||||||    
T  9665375 gtcggagttcgaaccccggaccttacatatattatatattgttcataccaattgagttaaactcacgaggac 9665304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 8569772 - 8569703
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||| ||||||||||| || |||||||||| | |||||| ||| ||||||  |||||||||| ||||    
T  8569772 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaattgagttaaactcacggggac 8569703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 29740545 - 29740476
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||| ||||||||||| || | |||||||| | |||||| ||| |||||| |||| |||||||||||    
T  29740545 cggggtttgaaccccggaccttgcgtatattatgcattgtccataccaattgagctaagctcacgaggac 29740476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 9333785 - 9333725
Alignment:
Q  109 aaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||| || ||||||| || | |||||||||| |||||| |||| |||||||||||    
T  9333785 aaccccggaccttgcatatataatgcattgtccttaccaattgagctaagctcacgaggac 9333725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 172
Target Start/End: Complemental strand, 239870 - 239798
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttt 172  Q
    ||||||| |||| |||||| || |||||||||| | |||||||||| || ||| |||||||||||||||||||    
T  239870 cggggtttgaactccggactttgcatatattatgcattgtccttaccaactgagctaaactcacgaggacttt 239798  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 21482515 - 21482586
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||| |||||||||| || |||||||||| | || ||||||| || ||| ||||||||||||||||    
T  21482515 gtcggggttcaaaccccggaccttgcatatattatacattatccttaccaactgagctaaactcacgaggac 21482586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 12124605 - 12124539
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||||| || |||||||||| | |||||||||| || ||| ||||||||||| ||||    
T  12124605 ggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaaactcacggggac 12124539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 20455954 - 20455885
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||| |||||||||||||| || |||||||||| | |||||| ||| |||||| |||| |||||||||||    
T  20455954 cgggattcgaaccccggaccttgcatatattatgcattgtccataccaattgagctaagctcacgaggac 20455885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 4238824 - 4238753
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||| |||||||||||| || ||||||||||||| | |||||| |||||| ||| |||| ||||| |||||    
T  4238824 gtcggagttcgaaccccgaaccttacatatattatgcattgtccatactaactgagctaagctcacaaggac 4238753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 163
Target Start/End: Original strand, 5137807 - 5137866
Alignment:
Q  104 gttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    ||||||||||||||| || |||||||||| | |||||||||| ||| || ||||||||||    
T  5137807 gttcgaaccccggaccttgcatatattatacattgtccttaccaatcgagctaaactcac 5137866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 116 - 167
Target Start/End: Complemental strand, 15770837 - 15770786
Alignment:
Q  116 gacgttacatatattatccgttgtccttactaattgaactaaactcacgagg 167  Q
    ||||||||||||||||| | |||||| ||| ||||||||||| |||||||||    
T  15770837 gacgttacatatattatgcattgtccataccaattgaactaagctcacgagg 15770786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 171
Target Start/End: Complemental strand, 29544690 - 29544619
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggactt 171  Q
    ||||||| ||||||||||| || |||||||||| | |||||| ||| |||||| |||| ||||| |||||||    
T  29544690 cggggtttgaaccccggaccttgcatatattatgcattgtccctaccaattgagctaagctcactaggactt 29544619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 102 - 164
Target Start/End: Complemental strand, 24593437 - 24593375
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    ||||||||||||||||| || |||||||||| | |||||||||| || ||| |||| ||||||    
T  24593437 gggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacg 24593375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 161
Target Start/End: Complemental strand, 41813043 - 41813005
Alignment:
Q  123 catatattatccgttgtccttactaattgaactaaactc 161  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  41813043 catatattatacattgtccttactaattgaactaaactc 41813005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 41187455 - 41187528
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttta 173  Q
    ||||||||||||||||||| || ||||| |||| | |||||| ||| || | | |||| |||||||||||||||    
T  41187455 cggggttcgaaccccggactttgcatattttatgcattgtccataccaactaagctaagctcacgaggacttta 41187528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 44026663 - 44026602
Alignment:
Q  108 gaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||| || ||||||||||||| |||||||| ||| ||||||  ||| |||||||||||    
T  44026663 gaaccccgaaccttacatatattatgcgttgtccataccaattgagttaagctcacgaggac 44026602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 28771645 - 28771581
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    ||||||||||||| ||||  || |||||||||| | |||||||||| || ||| |||||||||||    
T  28771645 cggggttcgaaccgcggatcttgcatatattatgcattgtccttaccaactgagctaaactcacg 28771581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 44488011 - 44488071
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    |||| |||| ||| || ||||||||||||| | |||||||||| || ||||||||||||||    
T  44488011 ggtttgaactccgaaccttacatatattatgcattgtccttaccaactgaactaaactcac 44488071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 98 - 172
Target Start/End: Complemental strand, 21557498 - 21557424
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttt 172  Q
    |||||| |||||||| ||||| ||||||||||||| | |||||| |||||| |||  ||| ||||||||||||||    
T  21557498 gtcgggattcgaacctcggaccttacatatattatgcattgtccatactaactgagttaagctcacgaggacttt 21557424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 170
Target Start/End: Original strand, 32115407 - 32115474
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    |||| |||||||| || ||||||||||||| | |||||| || ||| |||||||||||||||| ||||    
T  32115407 ggtttgaaccccgaaccttacatatattatgcattgtccatattaactgaactaaactcacgacgact 32115474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Original strand, 27750905 - 27750971
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||||| || |||||||||| |  ||||||||| || ||| |||| |||||||||||    
T  27750905 ggttcgaaccccggaccttgcatatattatgcactgtccttaccaactgagctaagctcacgaggac 27750971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 171
Target Start/End: Complemental strand, 8072788 - 8072719
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtcctt-actaattgaactaaactcacgaggactt 171  Q
    |||||||||||||||| ||  ||||||||| | |||| ||| ||||| ||||||||||||||| ||||||    
T  8072788 ggttcgaaccccggaccttgtatatattatgcattgtactttactaactgaactaaactcacggggactt 8072719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 27587284 - 27587215
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||| ||||||||||| || ||||||| || | |||||||||| || ||| |||| |||||||||||    
T  27587284 cggggtttgaaccccggaccttgcatatatcatgcattgtccttaccaactgagctaagctcacgaggac 27587215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 35149278 - 35149327
Alignment:
Q  120 ttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||| |||| | || ||||||||||||||||||| |||||||||||    
T  35149278 ttacatattttatacattatccttactaattgaactaagctcacgaggac 35149327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 19778123 - 19778059
Alignment:
Q  105 ttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||| || |||||||||| | |||||||||| || ||| |||| |||||| ||||    
T  19778123 ttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacggggac 19778059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Complemental strand, 29499833 - 29499765
Alignment:
Q  101 ggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||| |||| || ||||| |||| | |||||| ||| |||||| |||| |||||||||||    
T  29499833 ggggttcgaaccctggaccttgcatattttatgcattgtccataccaattgagctaagctcacgaggac 29499765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 30623357 - 30623293
Alignment:
Q  99 tcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    |||||||||||||||| ||| || |||||||||| | |||||||||| || ||| |||| |||||    
T  30623357 tcggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagctcac 30623293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 166
Target Start/End: Complemental strand, 9413861 - 9413795
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgag 166  Q
    |||| ||||||||||| || ||||||||||||| | |||| ||||| || |||||||||||||||||    
T  9413861 cgggattcgaaccccgaaccttacatatattatgcattgttcttaccaactgaactaaactcacgag 9413795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 170
Target Start/End: Complemental strand, 25533036 - 25532966
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    ||||||| ||||||||||| || |||||||||| | |||||| ||| || |||||||| ||||||||||||    
T  25533036 cggggtttgaaccccggaccttgcatatattatgcattgtccataccaactgaactaagctcacgaggact 25532966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 2613787 - 2613717
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgagga 168  Q
    |||||||||||||||||| || |||||||| |||| | |||||| ||| || ||| |||| ||||||||||    
T  2613787 gtcggggttcgaaccccgaaccttacatattttatgcattgtccataccaactgagctaagctcacgagga 2613717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 21638176 - 21638111
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacga 165  Q
    ||||||||||||||||||| || ||||||| || | |||||| ||| |||||| |||| |||||||    
T  21638176 cggggttcgaaccccggaccttgcatatatcatgcattgtccgtaccaattgagctaagctcacga 21638111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 38448864 - 38448933
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||| |||||||||||||| || |||||||||| | |||||||||| || ||| |||| |||||| ||||    
T  38448864 cgggattcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacggggac 38448933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 41884803 - 41884872
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||||| ||  |||||||||   ||||||  ||||| ||| ||||||||||||||||    
T  41884803 cggggttcgaaccccggaccttgtatatattatgtattgtccaaactaactgagctaaactcacgaggac 41884872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 45481552 - 45481487
Alignment:
Q  104 gttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||| || |||||||||| | |||||||||| || |||| ||| |||||| ||||    
T  45481552 gttcgaaccccggaccttgcatatattatgcattgtccttaccaaatgaattaagctcacggggac 45481487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 45652120 - 45652181
Alignment:
Q  103 ggttcgaaccccggacgttacatatattat-ccgttgtccttactaattgaactaaactcac 163  Q
    |||||||||| ||||| ||||||||||||| |  ||||||||| |||||||||||| |||||    
T  45652120 ggttcgaacctcggaccttacatatattatgcatttgtccttattaattgaactaagctcac 45652181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 17139513 - 17139585
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    ||||||||| ||||||||||| ||  ||||||||| | |||||| ||| || ||| |||| ||||||||||||    
T  17139513 gtcggggtttgaaccccggaccttgaatatattatgcattgtccctaccaactgagctaagctcacgaggact 17139585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 31890770 - 31890818
Alignment:
Q  123 catatattatccgttgtccttactaattgaactaaactcacgaggactt 171  Q
    |||||||||| | |||||||||| || ||| ||||||||||||||||||    
T  31890770 catatattatgcattgtccttaccaactgagctaaactcacgaggactt 31890818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 40752837 - 40752906
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||||| || ||||||||||   |||||| |||||| ||| |||| |||||||||||    
T  40752837 cggggttcgaaccccggacattgcatatattatgtattgtccatactaactgagctaagctcacgaggac 40752906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 165
Target Start/End: Complemental strand, 7908658 - 7908591
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacga 165  Q
    |||||||||||||||||| || |||||||| |||| | |||||| ||| || ||||||||||| ||||    
T  7908658 gtcggggttcgaaccccgaaccttacatattttatgcattgtccataccaactgaactaaacttacga 7908591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 27833397 - 27833444
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttac 145  Q
    ||||||||| ||||||||||| ||||||||||||| | ||||||||||    
T  27833397 gtcggggtttgaaccccggaccttacatatattatgcattgtccttac 27833444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Original strand, 33473521 - 33473588
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||| |||||| |||| || |||||||||| | |||||||| || | ||||||||||||||||||||    
T  33473521 gggttggaaccctggaccttgcatatattatgcattgtccttgctgactgaactaaactcacgaggac 33473588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 46987149 - 46987086
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    ||||||||||||||||||| || |||||||||| | |||||||||| || ||| |||| |||||    
T  46987149 cggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgagctaagctcac 46987086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 98 - 164
Target Start/End: Complemental strand, 41029337 - 41029271
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    |||||| |||||||||||||| || |||||||||| | |||||||||| || ||| |||| ||||||    
T  41029337 gtcgggattcgaaccccggaccttgcatatattatacattgtccttaccaactgagctaagctcacg 41029271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 145583 - 145510
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatatt-atccgttgtccttactaattgaactaaactcacgaggact 170  Q
    ||||||||| ||||||||||| || |||||||| ||  ||||||||||| || |||||||| ||||||| ||||    
T  145583 gtcggggtttgaaccccggaccttgcatatattaatgtgttgtccttaccaactgaactaagctcacgatgact 145510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 163
Target Start/End: Complemental strand, 1046620 - 1046556
Alignment:
Q  99 tcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    ||||| |||||||||| ||| ||||||||||||| | || || ||||||| ||| ||||||||||    
T  1046620 tcgggattcgaaccccagaccttacatatattatgcattatctttactaactgacctaaactcac 1046556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Complemental strand, 8227407 - 8227343
Alignment:
Q  105 ttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||| |||| ||||||||||||| | |||||||||  || ||| ||||||||||| ||||    
T  8227407 ttcgaaccctggactttacatatattatgcattgtccttatcaactgagctaaactcacggggac 8227343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 170
Target Start/End: Complemental strand, 10244788 - 10244720
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    ||||| ||||||||||| || |||||||||| | |||||| ||| || ||| |||| ||||||||||||    
T  10244788 gggtttgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggact 10244720  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 169
Target Start/End: Complemental strand, 20205876 - 20205816
Alignment:
Q  109 aaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||| ||||||||||||| | |||||| ||| || ||| ||||||| ||||||||    
T  20205876 aaccccggactttacatatattatgcattgtccataccaactgagctaaacttacgaggac 20205816  T

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Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 164
Target Start/End: Original strand, 38858170 - 38858234
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    |||| |||||||| ||||| ||||||||||||| |  |||| |||| ||||||||||| ||||||    
T  38858170 cgggattcgaacctcggaccttacatatattatgcactgtctttaccaattgaactaagctcacg 38858234  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 100 - 173
Target Start/End: Original strand, 40715947 - 40716020
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggacttta 173  Q
    ||||||| ||||||||||| || |||||||||| | |||||| ||  |||||| |||| |||||||||||||||    
T  40715947 cggggtttgaaccccggaccttgcatatattatgcattgtccatatcaattgagctaagctcacgaggacttta 40716020  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 164
Target Start/End: Complemental strand, 26409316 - 26409252
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    ||||||||||||||||||| ||||||||||||| | |||||| ||| || ||| |||| ||||||    
T  26409316 cggggttcgaaccccggaccttacatatattatgcattgtccataccaactgagctaagctcacg 26409252  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 105 - 164
Target Start/End: Complemental strand, 3955604 - 3955545
Alignment:
Q  105 ttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacg 164  Q
    ||||||||||| || ||||||||||||| | ||||| |||| ||||||||||| ||||||    
T  3955604 ttcgaaccccgaacattacatatattatgcattgtctttaccaattgaactaagctcacg 3955545  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 102 - 169
Target Start/End: Complemental strand, 37932391 - 37932324
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||| || |||||||||| | |||||| ||| || ||| |||| |||||||||||    
T  37932391 gggttcgaaccccggaccttgcatatattatgcattgtccataccaactgagctaagctcacgaggac 37932324  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 124 - 165
Target Start/End: Original strand, 5243852 - 5243893
Alignment:
Q  124 atatattatccgttgtccttactaattgaactaaactcacga 165  Q
    ||||||||| | ||||||||||||||||||||||||| ||||    
T  5243852 atatattatgcattgtccttactaattgaactaaacttacga 5243893  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 6624839 - 6624770
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||||| || |||||||||| | |||||| | | || ||| |||| |||||||||||    
T  6624839 cggggttcgaaccccggaccttgcatatattatgcattgtccatgccaactgagctaagctcacgaggac 6624770  T

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Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 26655527 - 26655486
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtcc 141  Q
    ||||||||||||||||||| ||||||||||||| | ||||||    
T  26655527 cggggttcgaaccccggaccttacatatattatgcattgtcc 26655486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 141
Target Start/End: Complemental strand, 26927112 - 26927071
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtcc 141  Q
    ||||||||||||||||||| ||||||||||||| | ||||||    
T  26927112 cggggttcgaaccccggaccttacatatattatgcattgtcc 26927071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 163
Target Start/End: Original strand, 4763187 - 4763247
Alignment:
Q  103 ggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcac 163  Q
    |||| ||||||||||| ||||||||||||| | ||||| |||| ||||||  |||||||||    
T  4763187 ggtttgaaccccggaccttacatatattatgcattgtctttaccaattgagttaaactcac 4763247  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 170
Target Start/End: Complemental strand, 39914965 - 39914894
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    ||||||||||||| ||||||| || |||||||||| | |||||||||| ||||||  ||| |||||| |||||    
T  39914965 gtcggggttcgaa-cccggaccttgcatatattatgcattgtccttaccaattgagttaagctcacgcggact 39914894  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 7464487 - 7464558
Alignment:
Q  98 gtcggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||| ||||||||||| ||||||||||||| | |||||| ||| || |||  ||| |||||||||||    
T  7464487 gtcggggtttgaaccccggaccttacatatattatgcattgtccctaccaactgagttaagctcacgaggac 7464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 28130932 - 28131001
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||| ||| |||||| ||| || |||||||||| | |||||||||| | ||||||||| |||||||||||    
T  28130932 cgggattcaaaccccagaccttgcatatattatgcattgtccttaccatttgaactaagctcacgaggac 28131001  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 44579699 - 44579630
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||||||||||||||| || ||||| |||| | |||||| ||| || ||| |||| |||||||||||    
T  44579699 cggggttcgaaccccggaccttgcatattttatgcattgtccataccaactgagctaagctcacgaggac 44579630  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 52904141 - 52904210
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    ||||||| ||||||| ||| || |||||||||| | |||||||||| || ||| |||| |||||||||||    
T  52904141 cggggtttgaacccccgacattgcatatattatgcattgtccttaccaactgagctaacctcacgaggac 52904210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 28266777 - 28266717
Alignment:
Q  102 gggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactca 162  Q
    |||| |||||||||||| || |||||||||| | |||||||||| || |||||||| ||||    
T  28266777 gggtacgaaccccggaccttgcatatattatgcattgtccttaccaactgaactaacctca 28266717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 169
Target Start/End: Original strand, 35191816 - 35191884
Alignment:
Q  101 ggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||| ||| || |||||||||| | |||||||||| || ||| |||| | |||||||||    
T  35191816 ggggttcgaaccccagaccttgcatatattatgcattgtccttaccaactgagctaagcgcacgaggac 35191884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 105 - 169
Target Start/End: Original strand, 53633620 - 53633684
Alignment:
Q  105 ttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggac 169  Q
    |||||||||||||| ||||||||||||| | || ||||||| || |||  ||| |||||||||||    
T  53633620 ttcgaaccccggaccttacatatattatgcattatccttaccaactgagttaagctcacgaggac 53633684  T

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Target: scaffold0262 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 101 - 170
Target Start/End: Original strand, 15929 - 15998
Alignment:
Q  101 ggggttcgaaccccggacgttacatatattatccgttgtccttactaattgaactaaactcacgaggact 170  Q
    |||||| ||||||| ||| || |||||||||| | |||||||||| ||||||  ||| ||||||||||||    
T  15929 ggggtttgaaccccagaccttgcatatattatacattgtccttaccaattgagttaagctcacgaggact 15998  T

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Target: scaffold0354 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 7218 - 7270
Alignment:
Q  100 cggggttcgaaccccggacgttacatatattatccgttgtccttactaattga 152  Q
    ||||||||||||||| ||| ||| ||||| ||| ||||||||||| |||||||    
T  7218 cggggttcgaaccccagaccttatatataatatgcgttgtccttattaattga 7270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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