View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19295_high_4 (Length: 404)
Name: NF19295_high_4
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 9 - 388
Target Start/End: Original strand, 41299486 - 41299865
Alignment:
| Q |
9 |
agcaacacagaaacacgacaacctcggacggaggaaacaatattaatcatgaagaggataatcttaatgtacttcaaaaccaatctcaaactcaacctca |
108 |
Q |
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| T |
41299486 |
agcaacaaagaaacacgacaacctcggacggaggaaacaatattaatcatgaagaggataatcttaatgtacttcaaaaccaatctcaaactcaacctca |
41299585 |
T |
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| Q |
109 |
cgaggatcaaaagccacgactccttcgaatcgattctgaatgtgtctcgtctatcatcaacaatgatcataaaaatgatgctaataataagaatttgaat |
208 |
Q |
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| T |
41299586 |
cgaggatcaaaagccacgactccttcgaatcgattctgaatgtgtctcgtctatcatcaacaatgatcataaaaatgatgctaataataagaatttgaat |
41299685 |
T |
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| Q |
209 |
catcatcaattagccgcggatacgtttggatcggttgatattgatttttcatcttataatacgcatcattcttcttctgacatggttgctgcttacacaa |
308 |
Q |
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| T |
41299686 |
catcatcaattagccgcggatgcgtttggctcggttgatattgatttttcatcttataatacgcatcattcttcttctgacatggttgctgcttacacaa |
41299785 |
T |
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| Q |
309 |
gtggtgagagtttccaccaaggtggcagcagtggtggagtgtcattgacgttagggttacaacaacatggtggaaatgga |
388 |
Q |
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| T |
41299786 |
gtggtgagagtttccaccaaggtggcagcagtggtggagtgtcattgacgttagggttacaacaacatggtggaaatgga |
41299865 |
T |
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