View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19295_high_6 (Length: 382)
Name: NF19295_high_6
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 13 - 366
Target Start/End: Original strand, 38225022 - 38225376
Alignment:
| Q |
13 |
aatatgtttctttcggtaagttttgaaatgggtatttt-ttgaggtcatgagaaaaaggtatggagacaaactttaagaaaattgctctataggcactta |
111 |
Q |
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| T |
38225022 |
aatatgtttctttctgtaagttttgaaatgggtatttttttgaggtcatgagaaaaaggcgtggagacaaactttaagaaagttgctctataggcactta |
38225121 |
T |
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| Q |
112 |
caccttaaactgaccaaaatattccaaacagatattagctatcgttcgctctcaacagttaattgtcgtttcagacatatcatatacaagaacgcataaa |
211 |
Q |
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| T |
38225122 |
caccttaaactgaccaaaatatcccaaatagatattagctatcgttcactctcaacagttaattgtcgtttcagacatatcgtatacaagaacgcataaa |
38225221 |
T |
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| Q |
212 |
catacttgttcttgttagaaacgataattaattaccgttcgacgctttggttgtattctaaagcatatttccacatgcgcgacttctaagtgacatcatg |
311 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225222 |
catacttgttcttattagaaacgataattaattaccgttcgacgctttggttgtattctaaagcatatttccacatgcgcgacttctaagtgacatcatg |
38225321 |
T |
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| Q |
312 |
tattggtggcttgaagagactctacatctaaaatttgaagctcttagaagttact |
366 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38225322 |
tattggtggcttgaagagactctacatctaaaatttgaagctcttagaagttact |
38225376 |
T |
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