View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19295_high_8 (Length: 323)
Name: NF19295_high_8
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 12040381 - 12040083
Alignment:
| Q |
9 |
gagatgaacagctttggaatcagaatgaaagatcaagttatggtctccaaacaaaggtgtatacccttcatcaaaaggtataataggaaaatttctaggt |
108 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12040381 |
gagatgaacagctttggaatcagaatgaatgatcaagttatggtctccaaacaaaggtgtatacccttcatcaaaaggtataataggaaaatttctaggt |
12040282 |
T |
|
| Q |
109 |
gaaacagagtaacaaggcataacnnnnnnnnnnnnncagaacaagaacaacatcatatgaatcttttccatgtttttgtttattttgtttaatgatcaat |
208 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
12040281 |
gaaacagagtaacaaggcataacaaaaataaaaaaacagaacaagaacaacatcatttgaatcttttccatgtttttgtttgttttgtttaatgatcaat |
12040182 |
T |
|
| Q |
209 |
caaatacgttannnnnnnctttctatagattcatgtgtgtcacagaaatttttcttaagggtgtgaaatattaaattaaatatatgtaagaataagaat |
307 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12040181 |
caaatatgttctttttttctttctatagattcatgtgtgtcacagaaatttttcttaagggtgtgaaatattaaattaaatatatgtaagaataagaat |
12040083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University