View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19295_low_2 (Length: 453)
Name: NF19295_low_2
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_low_2 |
 | |
|
| [»] scaffold0690 (1 HSPs) |
| | |
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Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 22)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 17 - 443
Target Start/End: Original strand, 9236047 - 9236473
Alignment:
| Q |
17 |
acttctttaccttcaatcaaattgtgaatccattctgggtacaaaacttggaatgtttcctcggctgacaggttagtattctttcttccacaaaccatct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
9236047 |
acttctttaccttcaatcaaattgtgaatccattctgggtacaaaacttggaatgtttccttggctgactggttagtattctttcttccaccaaccatct |
9236146 |
T |
|
| Q |
117 |
caagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctct |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9236147 |
caagcaacaacataccgtagctataaatatcagacttataagaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctct |
9236246 |
T |
|
| Q |
217 |
cgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattg |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9236247 |
cgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattg |
9236346 |
T |
|
| Q |
317 |
tgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaatttgttgcaacttttccc |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
9236347 |
tgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaattcgttgcaacttttccc |
9236446 |
T |
|
| Q |
417 |
aaccgagaaaaacttccttgttctctg |
443 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
9236447 |
taccgagaaaaacttccttgttctctg |
9236473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 20 - 441
Target Start/End: Complemental strand, 9378183 - 9377762
Alignment:
| Q |
20 |
tctttaccttcaatcaaattgtgaatccattctgggtacaaaacttggaatgtttcctcggctgacaggttagtattctttcttccacaaaccatctcaa |
119 |
Q |
| |
|
|||||| ||||||| | ||| || ||||| ||||||||||||||||||||||||||||| | ||| |||||||||||||| || | ||||||||| | |
|
|
| T |
9378183 |
tctttatcttcaataagattatggatccactctgggtacaaaacttggaatgtttcctcccccaacacattagtattctttctacctccaaccatctcta |
9378084 |
T |
|
| Q |
120 |
gcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgc |
219 |
Q |
| |
|
||||||| || ||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||| || |
|
|
| T |
9378083 |
gcaacaatattccgtagctataaatatcagacttgtaagaaacatttccgaagtttcttgagaaaacttcaggtgcaatgtagcccaatgttcctctagc |
9377984 |
T |
|
| Q |
220 |
tgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgt |
319 |
Q |
| |
|
||| || |||||||| || ||||| ||||| ||||||| |||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9377983 |
tgcggttatagacaccgtactttgatttttgggacacagtttagcaagtccaaagtcagtaattttaggactcaaattatcatctattaacacattgtgt |
9377884 |
T |
|
| Q |
320 |
ggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaatttgttgcaacttttcccaac |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
9377883 |
ggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctctagcaacaccaagagcaatgcgttgcaacttttcccaac |
9377784 |
T |
|
| Q |
420 |
cgagaaaaacttccttgttctc |
441 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
9377783 |
caagaaaaacatcattgttctc |
9377762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 89 - 438
Target Start/End: Complemental strand, 8927347 - 8926998
Alignment:
| Q |
89 |
ttagtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaactt |
188 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||||||||||||||||||| || |||||||||||||| || ||||| || ||||||| || ||||||| |
|
|
| T |
8927347 |
ttagtattctttcttcctccaaccatctctagcaacaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaactt |
8927248 |
T |
|
| Q |
189 |
caggtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttggg |
288 |
Q |
| |
|
||||||| ||||| || || ||||| || ||||||||||| || || ||||| || ||||| | |||| || || | || ||||| | |||||| || |
|
|
| T |
8927247 |
caggtgccatgtaacctaatgttcccctggctgcagtcatcgatacagtgctatgatttttagagcacagcttcgctaaaccgaagtccgatatttttgg |
8927148 |
T |
|
| Q |
289 |
actcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaaca |
388 |
Q |
| |
|
| | ||||| ||||||| || |||||||| |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| | |||| |
|
|
| T |
8927147 |
aatgaaattgtcatctaacaagacattgtggggattgatatcaaagtgaagaattctatgatcacaaccttggtgaagatactcaatcccattggcaatg |
8927048 |
T |
|
| Q |
389 |
ccaagagcaatttgttgcaacttttcccaaccgagaaaaacttccttgtt |
438 |
Q |
| |
|
|| ||||||||||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
8927047 |
cctagagcaatttgttgcaataagtcccaaccaaggaaaacatccttgtt |
8926998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 89 - 438
Target Start/End: Complemental strand, 8939773 - 8939424
Alignment:
| Q |
89 |
ttagtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaactt |
188 |
Q |
| |
|
||||||||||||||||| | ||||||||| |||| ||||||||||||||| || |||||||||||||| || ||||| || ||||||| || ||||||| |
|
|
| T |
8939773 |
ttagtattctttcttcctccaaccatctccagcagcaacataccgtagctgtatatatcagacttataagagacattcccaaagtttcgagaaaaaactt |
8939674 |
T |
|
| Q |
189 |
caggtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttggg |
288 |
Q |
| |
|
||||||| ||||| || || ||||| || ||||| ||||| || ||||| ||||| ||||| | |||| ||||| | || ||||| | |||||| || |
|
|
| T |
8939673 |
caggtgccatgtaccctaaagttcccctggctgcggtcattgatactgtactttgatttttggagcacagcttagctaaaccgaagtctgatatttttgg |
8939574 |
T |
|
| Q |
289 |
actcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaaca |
388 |
Q |
| |
|
| ||||| ||||||| ||| ||||| |||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||| | |||| |
|
|
| T |
8939573 |
aacgaaattgtcatctaataatacattatgtggattgatatcgaagtgaagaattctatgatcacagccttggtgaagatactcaatcccattggcaatg |
8939474 |
T |
|
| Q |
389 |
ccaagagcaatttgttgcaacttttcccaaccgagaaaaacttccttgtt |
438 |
Q |
| |
|
|||||||||||||||||||| |||||||| || ||||| |||||||| |
|
|
| T |
8939473 |
ccaagagcaatttgttgcaataagtcccaaccaaggaaaacatccttgtt |
8939424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 92 - 375
Target Start/End: Original strand, 9466448 - 9466731
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| ||||||||| | |||||||||||| || ||||| |||||||||||||| || ||||| ||||||||||| || |||||||| | |
|
|
| T |
9466448 |
gtattctttcttcctgcaaccatctccaacaacaacataccataactatatatatcagacttatatgagacattcccgaagtttctagaaaaaacttcgg |
9466547 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || || |||||| | ||||| |||||||||||||| ||| | ||||||| |||| ||||| | || ||||| || ||||||||| | |
|
|
| T |
9466548 |
gtgccatgtagcctaacgttcctttggctgcggtcatagacactgtacttcgatttttcgagcacatcttagccaaaccgaagtctgtaattttgggagt |
9466647 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaat |
375 |
Q |
| |
|
||||| ||||||| || ||||| || |||||||| ||||||||||| ||||| ||||||||||| |||||||||||||| |
|
|
| T |
9466648 |
gaaattctcatctaacaagacattatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactcaat |
9466731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 92 - 417
Target Start/End: Complemental strand, 9364790 - 9364465
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| | |||||| || | ||| ||||||||||| || || |||||||||||||| || ||||| || |||||||| || |||||||||| |
|
|
| T |
9364790 |
gtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcag |
9364691 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || || ||||| | ||||||||||| || || | ||||| ||||| | ||| | || || | ||||| || || ||||||||| | |
|
|
| T |
9364690 |
gtgccatgtagcctaatgttcccttagctgcagtcatggatacgatactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagt |
9364591 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacacca |
391 |
Q |
| |
|
||||| ||||||| || ||||| || |||||||| |||||||| || ||||| ||||||||||| || ||||||||||| || |||| | || |
|
|
| T |
9364590 |
gaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcct |
9364491 |
T |
|
| Q |
392 |
agagcaatttgttgcaacttttccca |
417 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
|
|
| T |
9364490 |
agagcaattttttgcaacttatccca |
9364465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 94 - 417
Target Start/End: Complemental strand, 9300485 - 9300162
Alignment:
| Q |
94 |
attctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggt |
193 |
Q |
| |
|
|||||| ||||| | ||||||||| ||||||||||| || || ||||| ||||| |||||||| || ||||| || |||||||| || |||||||| ||| |
|
|
| T |
9300485 |
attcttccttcccccaaccatctccagcaacaacatgccataactatatatatcggacttataagagacattcccaaagtttctagaaaaaacttcgggt |
9300386 |
T |
|
| Q |
194 |
gcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactca |
293 |
Q |
| |
|
|| |||||||| || |||||| | || || |||||||| | || ||||| ||||||| |||| ||||| | || ||||| || ||||| || | | |
|
|
| T |
9300385 |
gccatgtatcctaatgttcctttggccgcggtcatagatatagtactttgatttttcgagcacatcttagccaaaccgaagtctgtaatttttggggtta |
9300286 |
T |
|
| Q |
294 |
aattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaag |
393 |
Q |
| |
|
|||| ||||| || || || || || |||||||| ||||||||||| ||||| ||||||||||| ||||||||||| || || | || | || || |
|
|
| T |
9300285 |
aattgtcatcgatcaagacgttatgaggattgatgtcaaagtgaagaattctttgatcacaaccttggtgaagatactctattccattggctatgcctag |
9300186 |
T |
|
| Q |
394 |
agcaatttgttgcaacttttccca |
417 |
Q |
| |
|
|||||||||||||||||| ||||| |
|
|
| T |
9300185 |
agcaatttgttgcaacttatccca |
9300162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 93 - 427
Target Start/End: Original strand, 9437484 - 9437818
Alignment:
| Q |
93 |
tattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcagg |
192 |
Q |
| |
|
|||| |||||||| | |||||| ||||||| ||||| || || ||||| || |||| ||||| || |||||||| ||||| ||||| || |||||||| |
|
|
| T |
9437484 |
tattttttcttcctccaaccatttcaagcagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg |
9437583 |
T |
|
| Q |
193 |
tgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactc |
292 |
Q |
| |
|
||||||||| || || || ||||| || ||||| | |||||| ||||||| ||||| | ||||||||| || | ||||| || || ||||| ||| |
|
|
| T |
9437584 |
tgcaatgtaacctaaagtccctcttgcggcagttactgacactttgctttgatttttagaacacaatttcgccaaaccaaaatcagtaatttttggaaca |
9437683 |
T |
|
| Q |
293 |
aaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaa |
392 |
Q |
| |
|
|| || ||||||| || ||| || || ||||| ||||| |||||||| ||| |||||||||| || |||||||||||||| ||| | || | |||| |
|
|
| T |
9437684 |
aacttgtcatctaatagcacgttatggggattaatatcgaagtgaagaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaa |
9437783 |
T |
|
| Q |
393 |
gagcaatttgttgcaacttttcccaaccgagaaaa |
427 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
9437784 |
gagcaatttgttgtagcttctcccatccgagaaaa |
9437818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 89 - 438
Target Start/End: Complemental strand, 8962700 - 8962351
Alignment:
| Q |
89 |
ttagtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaactt |
188 |
Q |
| |
|
||||||||||||||||| | |||||||| |||| |||||| || ||||| || |||||||| ||||| || ||||| || ||||||| || || |||| |
|
|
| T |
8962700 |
ttagtattctttcttcctccgaccatctccagcagcaacattccatagctgtatatatcagatttataagagacattcccaaagtttcgagaaaatactt |
8962601 |
T |
|
| Q |
189 |
caggtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttggg |
288 |
Q |
| |
|
||||||| |||||||| || ||||| || || |||||||| || || | |||| ||||| | ||||| || || | |||||||| | |||||| || |
|
|
| T |
8962600 |
caggtgccatgtatcctaatgttcccctagccgcagtcatcgatacaatagtttgatttttggagcacaacttggctaaaccaaagtctgatatttttgg |
8962501 |
T |
|
| Q |
289 |
actcaaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaaca |
388 |
Q |
| |
|
| | ||||| ||||||| || | |||||| |||||||||||||| ||||| ||||| |||||||| || |||||||||||||| || | |||| |
|
|
| T |
8962500 |
agtaaaattgtcatctaacaagatattgtgcggattgatatcaaaatgaagaattctttgatcacagccctggtgaagatactcaattccattggcaatg |
8962401 |
T |
|
| Q |
389 |
ccaagagcaatttgttgcaacttttcccaaccgagaaaaacttccttgtt |
438 |
Q |
| |
|
|| |||||||| |||||||| |||||||| || ||||| |||||||| |
|
|
| T |
8962400 |
cctagagcaatctgttgcaataagtcccaaccaaggaaaacatccttgtt |
8962351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 417
Target Start/End: Complemental strand, 9337931 - 9337606
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| | |||||| || | ||| ||||||||||| || || |||||||||||||| || ||||| || |||||||| || |||||||||| |
|
|
| T |
9337931 |
gtattctttcttcctccaaccatttccaacaataacataccgtaactgtatatatcagacttataagagacattaccaaagtttcttgaaaaaacttcag |
9337832 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || || ||||| | ||||||||||| || || ||||| ||||| | ||| | || || | ||||| || || ||||||||| | |
|
|
| T |
9337831 |
gtgccatgtagcctaatgttcccttagctgcagtcatggatacgacactttgattttttgaacatatcttggccaaaccaaaatctgtaattttgggagt |
9337732 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacacca |
391 |
Q |
| |
|
||||| ||||||| || ||||| || |||||||| |||||||| || ||||| ||||||||||| || ||||||||||| || |||| | || |
|
|
| T |
9337731 |
gaaattgtcatctaacaagacattatgaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaataccatttgctatgcct |
9337632 |
T |
|
| Q |
392 |
agagcaatttgttgcaacttttccca |
417 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
|
|
| T |
9337631 |
agagcaattttttgcaacttatccca |
9337606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 116 - 420
Target Start/End: Complemental strand, 10993124 - 10992820
Alignment:
| Q |
116 |
tcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctc |
215 |
Q |
| |
|
|||||||||| ||| || || ||||||| ||| || || || || |||||||| ||||| || || |||||||| || |||||||| ||||| ||||||| |
|
|
| T |
10993124 |
tcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctc |
10993025 |
T |
|
| Q |
216 |
tcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacatt |
315 |
Q |
| |
|
| ||||| ||||| || ||| |||||||| | | ||| |||||||| || |||||||| | |||||| ||| | || |||| || | ||||||||| |
|
|
| T |
10993024 |
tagctgcggtcattgaaactacgctttggtcccttgaacataatttagctagaccaaagtcagatatttttggaatgaagttatggtcaagtaacacatt |
10992925 |
T |
|
| Q |
316 |
gtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaatttgttgcaacttttcc |
415 |
Q |
| |
|
||||| ||||||||||| ||||| || | ||||||||||| |||||||||||||| ||| | || | ||| | |||||||| |||||||||| | |
|
|
| T |
10992924 |
ttgtggtttgatatcaaaatgaaggatgcgttgatcacaaccttgatgaagatactcaactcctttagctatacctaaagcaatttcatgcaactttttc |
10992825 |
T |
|
| Q |
416 |
caacc |
420 |
Q |
| |
|
||||| |
|
|
| T |
10992824 |
caacc |
10992820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 9085923 - 9086064
Alignment:
| Q |
94 |
attctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggt |
193 |
Q |
| |
|
|||||| ||||||| ||||||||| ||||||||||| || || |||||||||||||||||| |||||||| || || |||| || ||||||||||| |
|
|
| T |
9085923 |
attcttccttccaccaaccatctctagcaacaacatcccataactataaatatcagacttaagagaaacattcccaaaatttcgtgacaaaacttcaggc |
9086022 |
T |
|
| Q |
194 |
gcaatgtatcccaaggttcctctcgctgcagtcatagacact |
235 |
Q |
| |
|
|| || |||||||||||||| || || || ||||| |||||| |
|
|
| T |
9086023 |
gccatatatcccaaggttcccctagcagctgtcatggacact |
9086064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 119 - 228
Target Start/End: Original strand, 9125120 - 9125229
Alignment:
| Q |
119 |
agcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcg |
218 |
Q |
| |
|
||||||||||| || || |||||||||||||||||| ||||||||||| || |||| || |||||||||||||| || ||||||||||||||||| | |
|
|
| T |
9125120 |
agcaacaacatcccataactataaatatcagacttacgagaaacatttccaaaatttcgtgacaaaacttcaggtgccatatatcccaaggttcctctag |
9125219 |
T |
|
| Q |
219 |
ctgcagtcat |
228 |
Q |
| |
|
| |||||||| |
|
|
| T |
9125220 |
ccgcagtcat |
9125229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 417
Target Start/End: Original strand, 9242254 - 9242579
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||| ||||||||||| || || | ||| |||||||| || |||||||| || ||||| || |||||||||| |
|
|
| T |
9242254 |
gtattctttcttcctccaaccatctccaacaataacataccgtaactgtatacatcggacttataagagacatttccaaaatttctagaaaaaacttcag |
9242353 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || | ||||| | || |||||||| || || | ||||| ||||||| ||||| || || | ||||| || || |||| |||| | |
|
|
| T |
9242354 |
gtgccatgtagcctactgttcccttagccgcagtcatggatacaatactttgatttttcgaacacatcttggccaaaccaaaatctgtaatttggggaat |
9242453 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacacca |
391 |
Q |
| |
|
||||| ||||||| || ||||| | |||||||| |||||||| || ||||| ||||||||||| || ||||||||||| || | || | ||| |
|
|
| T |
9242454 |
gaaattgtcatctaacaagacattattaggattgatgtcaaagtgtagaattctttgatcacaaccttggtggagatactcaatgccattggctatacct |
9242553 |
T |
|
| Q |
392 |
agagcaatttgttgcaacttttccca |
417 |
Q |
| |
|
|||||||||| ||||||||| ||||| |
|
|
| T |
9242554 |
agagcaattttttgcaacttatccca |
9242579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 128 - 417
Target Start/End: Original strand, 9257255 - 9257548
Alignment:
| Q |
128 |
ataccgtagctataaatatcagacttatag----gaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgca |
223 |
Q |
| |
|
||||| |||||||| |||||||||||||| || ||||| || |||||||| || |||||||| ||||| |||||||| || ||||||||||||||| |
|
|
| T |
9257255 |
ataccatagctatatatatcagacttataattaagagacattaccaaagtttctagaaaaaacttcgggtgccatgtatcctaatgttcctctcgctgca |
9257354 |
T |
|
| Q |
224 |
gtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgtggat |
323 |
Q |
| |
|
|||||||| | || ||||| ||||| | |||| ||||| | ||||| | || ||||| || | ||||| ||||| || || ||||| || |||| |
|
|
| T |
9257355 |
gtcatagatatagtactttgattttttgagcacatcttagccaaaccaaaatttgtaatttttggggttaaattgtcatcgatcaagacattatgaggat |
9257454 |
T |
|
| Q |
324 |
tgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaatttgttgcaacttttccca |
417 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||| ||||||||||| || || | || | || |||||||||||||||||||| ||||| |
|
|
| T |
9257455 |
tgatgtcaaagtgaagaattctttgatcacaactttggtgaagatactcgattccattggctatgcctagagcaatttgttgcaacttgtccca |
9257548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 93 - 427
Target Start/End: Original strand, 9420401 - 9420735
Alignment:
| Q |
93 |
tattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcagg |
192 |
Q |
| |
|
|||| |||||||| | |||||| ||||| | ||||| || || ||||| || |||| ||||| || |||||||| ||||| ||||| || |||||||| |
|
|
| T |
9420401 |
tattttttcttcctccaaccatttcaagaagtaacatcccataactatatatgtcagctttatacgatacatttccaaagttcctcgaaaacacttcagg |
9420500 |
T |
|
| Q |
193 |
tgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactc |
292 |
Q |
| |
|
||||||||| || || | ||||| || ||||| | |||||| ||||||| ||||| | |||||||| || | ||||| || || ||||| ||| |
|
|
| T |
9420501 |
tgcaatgtaacctaaagcccctcttgcagcagttactgacactttgctttgatttttagagcacaatttcgccaaaccaaaatcagtaatttttggaaca |
9420600 |
T |
|
| Q |
293 |
aaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaa |
392 |
Q |
| |
|
|| || ||||||| |||||| || | ||||| ||||| |||||||| ||| |||||||||| || |||||||||||||| ||| | || | |||| |
|
|
| T |
9420601 |
aacttgtcatctaataacacgttatagggattaatatcgaagtgaagaatttgctgatcacaactcatgtgaagatactcaatacctttggctatgccaa |
9420700 |
T |
|
| Q |
393 |
gagcaatttgttgcaacttttcccaaccgagaaaa |
427 |
Q |
| |
|
||||||||||||| | ||| ||||| ||||||||| |
|
|
| T |
9420701 |
gagcaatttgttgtagcttctcccatccgagaaaa |
9420735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 116 - 330
Target Start/End: Complemental strand, 10930920 - 10930706
Alignment:
| Q |
116 |
tcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctc |
215 |
Q |
| |
|
|||||||||| ||| || || ||||||| ||| || || || || |||||||| ||||| || ||||||||||| || |||||||| ||||| ||||||| |
|
|
| T |
10930920 |
tcaagcaacatcattccataactataaacatctgatttgtaagacacatttccaaagttccttgagaaaacttctggagcaatgtagcccaaagttcctc |
10930821 |
T |
|
| Q |
216 |
tcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacatt |
315 |
Q |
| |
|
| ||||| ||||| |||||| ||||||||| | | ||| |||||||| || |||||||| | ||| || ||| | || |||| || | ||||||||| |
|
|
| T |
10930820 |
tagctgctgtcattgacactatgctttggtcccttgaacataatttagctagaccaaagtcagatatctttggaataaagttatggtcaagtaacacatt |
10930721 |
T |
|
| Q |
316 |
gtgtggattgatatc |
330 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
10930720 |
ttgtggtttgatatc |
10930706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 375
Target Start/End: Complemental strand, 11026580 - 11026321
Alignment:
| Q |
116 |
tcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctc |
215 |
Q |
| |
|
|||||||||| ||| || || || |||| ||| || || || || |||||||||||||| || || |||||||| || |||||||| ||||| ||||||| |
|
|
| T |
11026580 |
tcaagcaacatcattccataactgtaaacatctgatttgtaagacacatttccgaagttccttgaaaaaacttctggagcaatgtaccccaatgttcctc |
11026481 |
T |
|
| Q |
216 |
tcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacatt |
315 |
Q |
| |
|
| ||||||||||| || ||| |||| || | | | ||| |||||||| || |||||||| | |||||| ||| | || |||| || | ||||||||| |
|
|
| T |
11026480 |
tagctgcagtcattgatactatgctctgatcccttgaacataatttagctagaccaaagtcagatatttttggaataaagttatggtcaagtaacacatt |
11026381 |
T |
|
| Q |
316 |
gtgtggattgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaat |
375 |
Q |
| |
|
||||| |||||||| || || || || | ||||||||||| ||||||||| ||||| |
|
|
| T |
11026380 |
ttgtggcttgatatcgaaatggaggatgcgttgatcacaaccttgatgaagatattcaat |
11026321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 213
Target Start/End: Original strand, 8861517 - 8861636
Alignment:
| Q |
94 |
attctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggt |
193 |
Q |
| |
|
||||||||| || | |||||| || ||||||||||| ||||| || |||||||| |||||| || ||||| || || ||||| || | ||||||||| |
|
|
| T |
8861517 |
attctttctccctccaaccatttctagcaacaacattccgtaactgtaaatatctgacttaagagacacattcccaaaatttcttgatagaacttcaggc |
8861616 |
T |
|
| Q |
194 |
gcaatgtatcccaaggttcc |
213 |
Q |
| |
|
|| ||||||||||||||||| |
|
|
| T |
8861617 |
gccatgtatcccaaggttcc |
8861636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 110 - 201
Target Start/End: Complemental strand, 9495653 - 9495562
Alignment:
| Q |
110 |
accatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgta |
201 |
Q |
| |
|
|||||||| ||||||||||| || | ||||||| ||||||||| || || |||||||| ||||| || ||||||||||| ||||| ||||| |
|
|
| T |
9495653 |
accatctctagcaacaacattccaaaactataaacatcagacttgtacgacacatttccaaagttcctagagaaaacttctggtgctatgta |
9495562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 109 - 235
Target Start/End: Original strand, 8978932 - 8979058
Alignment:
| Q |
109 |
aaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaag |
208 |
Q |
| |
|
|||||| || ||||||||||| || ||||||||||||||||| ||| || ||||| || || ||||| || | |||||||||||| || ||||||||| |
|
|
| T |
8978932 |
aaccatttctagcaacaacattccatagctataaatatcagatttaagagacacattaccaaaatttcttgacagaacttcaggtgccatatatcccaag |
8979031 |
T |
|
| Q |
209 |
gttcctctcgctgcagtcatagacact |
235 |
Q |
| |
|
|| || || || || ||||| |||||| |
|
|
| T |
8979032 |
gtacccctagccgctgtcatggacact |
8979058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 94 - 235
Target Start/End: Original strand, 9069627 - 9069768
Alignment:
| Q |
94 |
attctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggt |
193 |
Q |
| |
|
|||||||||||| | |||||| || ||||||||||| || || || || |||||||||||| ||||||||||| || |||| || | ||||| ||| |
|
|
| T |
9069627 |
attctttcttcctccaaccatttctagcaacaacattccataactgtatatatcagacttaagagaaacatttccaaaatttcgagacactacttcgggt |
9069726 |
T |
|
| Q |
194 |
gcaatgtatcccaaggttcctctcgctgcagtcatagacact |
235 |
Q |
| |
|
|| || |||||||||||||| || || || ||||| |||||| |
|
|
| T |
9069727 |
gccatatatcccaaggttcccctagcagctgtcatggacact |
9069768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 124 - 417
Target Start/End: Complemental strand, 9171864 - 9171571
Alignment:
| Q |
124 |
caacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcaggtgcaatgtatcccaaggttcctctcgctgca |
223 |
Q |
| |
|
||||||||| |||||||| |||||||||||||| || ||||| || || ||||| || |||||||| ||||| |||||||| || |||||||| |||||| |
|
|
| T |
9171864 |
caacataccatagctatatatatcagacttataagagacattcccaaaatttctagaaaaaacttcgggtgccatgtatcctaatgttcctctggctgca |
9171765 |
T |
|
| Q |
224 |
gtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggactcaaattatcatctattaacacattgtgtggat |
323 |
Q |
| |
|
||||| || | || ||||| ||||| | ||||| ||||| | || ||||| || ||||| || | ||||| ||||||| ||| || || || |||| |
|
|
| T |
9171764 |
gtcattgatatagtactttgattttttgagcacaacttagccaaaccgaagtctgtaatttttggggtgaaattgtcatctagtaagacgttatgaggat |
9171665 |
T |
|
| Q |
324 |
tgatatcaaagtgaagtattctatgatcacaaccaatatgaagatactcaatccctcttgcaacaccaagagcaatttgttgcaacttttccca |
417 |
Q |
| |
|
| || ||||||||||| ||||| ||||||||||| || ||||||||||| || | || | || |||||||||||||||||||| ||||| |
|
|
| T |
9171664 |
taatgtcaaagtgaagaattctttgatcacaaccttggtgcagatactcaattccattggctattcctagagcaatttgttgcaacttgtccca |
9171571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0690 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0690
Description:
Target: scaffold0690; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 357
Target Start/End: Complemental strand, 1999 - 1734
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||| ||||||||||| || || ||||| |||||||| || |||||||| || ||||| || |||||||||| |
|
|
| T |
1999 |
gtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcag |
1900 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || || ||||| | |||| |||||| || || | ||||| ||||||| ||||| ||||| | ||||| || || ||||||||| | |
|
|
| T |
1899 |
gtgccatgtagcctaatgttcccttagctgtagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagt |
1800 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaacc |
357 |
Q |
| |
|
||||| ||||||| || | ||| || |||||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
1799 |
gaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttgatcacaacc |
1734 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 92 - 357
Target Start/End: Original strand, 15910107 - 15910372
Alignment:
| Q |
92 |
gtattctttcttccacaaaccatctcaagcaacaacataccgtagctataaatatcagacttataggaaacatttccgaagtttctcgagaaaacttcag |
191 |
Q |
| |
|
|||||||||||||| | ||||||||| | ||| ||||||||||| || || ||||| |||||||| || |||||||| || ||||| || |||||||||| |
|
|
| T |
15910107 |
gtattctttcttcctccaaccatctccaacaataacataccgtaactgtatatatcggacttataagagacatttccaaaatttctagaaaaaacttcag |
15910206 |
T |
|
| Q |
192 |
gtgcaatgtatcccaaggttcctctcgctgcagtcatagacactgtgctttggtttttcggacacaatttagcaagtccaaagtcggttattttgggact |
291 |
Q |
| |
|
|||| ||||| || || ||||| | ||| ||||||| || || | ||||| ||||||| ||||| ||||| | ||||| || || ||||||||| | |
|
|
| T |
15910207 |
gtgccatgtagcctaatgttcccttagctacagtcatggatacattactttgatttttcgaacacatcttagccaaaccaaaatctgtgattttgggagt |
15910306 |
T |
|
| Q |
292 |
caaattatcatctattaacacattgtgtggattgatatcaaagtgaagtattctatgatcacaacc |
357 |
Q |
| |
|
||||| ||||||| || | ||| || |||||||| |||||||| | ||||| ||||||||||| |
|
|
| T |
15910307 |
gaaattgtcatctagcaagatattatgaggattgatgtcaaagtgtaaaattctttgatcacaacc |
15910372 |
T |
|
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