View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19295_low_3 (Length: 432)
Name: NF19295_low_3
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 34 - 227
Target Start/End: Original strand, 39330507 - 39330700
Alignment:
| Q |
34 |
cctcataaatataaattctcaagttcagtatgagcaaagccttttaaactatcaattaagaaaattgcaatgaacataaagaagttatatctgcaaaaat |
133 |
Q |
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| T |
39330507 |
cctcataaatataaattctcaagttcagtatgagcaaagccttttaaactatcaattaagaaaattgcaatgaacataaagaagttatatctgcaaaaat |
39330606 |
T |
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| Q |
134 |
gctttttaaaaggctcttaaactacataagctgctcatcctgctcaaataagcttataatcctggataaacactgcacaaataagctgtcacag |
227 |
Q |
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| T |
39330607 |
gctttttaaaaggctcttaaactacataagctgctcatcctgctcaaataagcttataatcctggataaacactgcacaaataagctgtcacag |
39330700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 288 - 416
Target Start/End: Original strand, 39330761 - 39330889
Alignment:
| Q |
288 |
gaaggctatggagatgatcagtaacgaatatggtaggccaaaagccaacttactagtgtacatggcattttacaattcagtagccaagtagcacataaaa |
387 |
Q |
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| T |
39330761 |
gaaggctatggagatgttcagtaacgaatatggtaggccaaaagccaacttactagtgtacatggcattttacaattcagtagccaagtaccacataaaa |
39330860 |
T |
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| Q |
388 |
gtttatatcaatcatgattcactcaaatt |
416 |
Q |
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| T |
39330861 |
gtttatatcaatcatgattcactcaaatt |
39330889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 323 - 410
Target Start/End: Original strand, 39371720 - 39371809
Alignment:
| Q |
323 |
ggccaaaagccaacttactagtgtacatggcattttacaattcagtagccaagtagcacataaaa--gtttatatcaatcatgattcact |
410 |
Q |
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| T |
39371720 |
ggccaagagccaactaaccattgtacatggcatttttcaattcagtagccaagtaccaaataaaaagctttatatcaatcatgattcact |
39371809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 19 - 93
Target Start/End: Original strand, 39370885 - 39370959
Alignment:
| Q |
19 |
aagatcttacaaatacctcataaatataaattctcaagttcagtatgagcaaagccttttaaactatcaattaag |
93 |
Q |
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| T |
39370885 |
aagatcttccaaataactcgtaaatttaaaacctcaagttcggtatgagcaaagccttttaaactagcaattaag |
39370959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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