View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19295_low_7 (Length: 363)
Name: NF19295_low_7
Description: NF19295
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19295_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 329
Target Start/End: Complemental strand, 33116048 - 33115753
Alignment:
| Q |
14 |
ttctcagaattgcttttccttcctcctctttaccctgtagagacaagcaaaattctgtcacatagtggttgtagcatcgctaaaacactgtttt-gtagc |
112 |
Q |
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| T |
33116048 |
ttctcagaattgcttttccttcctcctctttaccctgtagagacaagcaaaattctgtcacataatgattgtagcatccctaagacactgtttttgtagc |
33115949 |
T |
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| Q |
113 |
ggatttgaacaaactattgattgacaacattggacaaacaatgtagtttctcacaaaatgaaatatagatgatttaactaacctttcgaaacaaccaacg |
212 |
Q |
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| T |
33115948 |
ggatttgaacaaactattgattgacaacattggacaaa----------------acaatg-----tagatgatttaactaacctttcgaaacaaccaacg |
33115870 |
T |
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| Q |
213 |
aggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaat |
312 |
Q |
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| T |
33115869 |
aggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacctccatgttccaggtgcctaaacaaat |
33115770 |
T |
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Back To:
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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 21559691 - 21559815
Alignment:
| Q |
188 |
aactaacctttcgaaacaaccaacgaggtgattctggcagccaaaacattagtagcaattgtagtatagcaggtaatgctgctacaccaagcatccacct |
287 |
Q |
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|||||||||||| |||||||||||||| |||||||| ||| || ||| | || | |||| || || |||| |||||| ||||| | ||||||||| |
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| T |
21559691 |
aactaacctttctgaacaaccaacgaggcgattctgggagcataagcatcaatacgatttgtgttaatgccggtactgctgcaacacctaacatccacct |
21559790 |
T |
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| Q |
288 |
ccatgttccaggtgcctaaacaaat |
312 |
Q |
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| T |
21559791 |
ccatgttcctggtgcctgaacaaat |
21559815 |
T |
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