View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_high_11 (Length: 408)
Name: NF19296_high_11
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_high_11 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 26881084 - 26881250
Alignment:
| Q |
13 |
cagagaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatgcttagagaaatggtgaaagccggtctccttttggtggaggaggttgttt |
112 |
Q |
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| T |
26881084 |
cagagaggaatgtggactcaccaaaatgaagttgttcccaaggccatgatacttagagaaatggtgaaagccggtctccttttggtcgaggaggttgttt |
26881183 |
T |
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| Q |
113 |
taataggagtttatgttccaatcgaggaagcaaccaggcgggaattagggaacaagagaagaacaca |
179 |
Q |
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| T |
26881184 |
taataggagtttatgttctaatcgaggaagcaacgaggcgggaattacggaacaagagaagaacaca |
26881250 |
T |
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Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 234 - 392
Target Start/End: Original strand, 26881255 - 26881416
Alignment:
| Q |
234 |
taggttataaattgtaaaactaatcaagatgcaagaa-tc--cccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
330 |
Q |
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||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26881255 |
taggttataaattgtaaaactaatcaagatgcaagaactcatcccgtacattctacacaacgttataaattgcaaaatcaaaactatataagcattagtt |
26881354 |
T |
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| Q |
331 |
ccatgggagatcaaatccacattccttgagtatccaaacaagtgtaatattagagttctttc |
392 |
Q |
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| T |
26881355 |
ccatgggagatcaaatccaaattccttgagtatccaaacaagtgtaatattagagttctttc |
26881416 |
T |
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