View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_high_17 (Length: 267)
Name: NF19296_high_17
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_high_17 |
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Alignment Details
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 110 - 244
Target Start/End: Complemental strand, 51545383 - 51545243
Alignment:
| Q |
110 |
agagaagagggagaagtagtatatttatataatacatgagtgcatatgctgcccac-aaagtcacttttatatccacagtttt-cggtttgtgattgtaa |
207 |
Q |
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| T |
51545383 |
agagaagagggagtactagtatatttatataatacactagtgcaaatgctgccccccaaagtcacttttatatccacagtttttcggtttgtgattgtaa |
51545284 |
T |
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| Q |
208 |
ttaatt----gttgttaatttatccagactttttcttaggc |
244 |
Q |
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| T |
51545283 |
ttaattaattgttgttaatttatccagactttttcttaggc |
51545243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 51545628 - 51545543
Alignment:
| Q |
21 |
ttatatataagataaagttagatcaataaaagttgatctacgtggttcaaaattttgacctgatacatcaacttttgttcatcaaa |
106 |
Q |
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| T |
51545628 |
ttatatataagataaagttagatcaacaaaagttaatgtacgtggttcaaaattttgagctgatacatcaacttttgttcaccaaa |
51545543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 34 - 99
Target Start/End: Complemental strand, 25455461 - 25455396
Alignment:
| Q |
34 |
aaagttagatcaataaaagttgatctacgtggttcaaaattttgacctgatacatcaacttttgtt |
99 |
Q |
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| T |
25455461 |
aaagttggatcaacaaaaattgatgtacctggtttaaaatttggaccagatgcatcaacttttgtt |
25455396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Original strand, 23956778 - 23956852
Alignment:
| Q |
24 |
tatataagataaagttagatcaataaaagttgatctacgtgg-ttcaaaattttgacctgatacatcaacttttg |
97 |
Q |
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| T |
23956778 |
tatataagaaaaagttagatcaacaaatgttgatgtacgtggttttaaaatttagaccatatacattaacttttg |
23956852 |
T |
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