View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19296_high_18 (Length: 267)

Name: NF19296_high_18
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19296_high_18
NF19296_high_18
[»] chr6 (5 HSPs)
chr6 (1-223)||(6626200-6626411)
chr6 (23-57)||(6626517-6626551)
chr6 (115-160)||(7470758-7470803)
chr6 (114-163)||(17382074-17382123)
chr6 (90-162)||(29283806-29283878)
[»] chr1 (5 HSPs)
chr1 (94-155)||(51031873-51031934)
chr1 (82-143)||(17669655-17669716)
chr1 (15-63)||(8797084-8797132)
chr1 (82-158)||(16033440-16033516)
chr1 (120-160)||(24506941-24506981)
[»] chr4 (3 HSPs)
chr4 (94-163)||(11949665-11949734)
chr4 (115-158)||(27372382-27372425)
chr4 (82-147)||(39093565-39093630)
[»] scaffold0045 (2 HSPs)
scaffold0045 (94-158)||(63857-63921)
scaffold0045 (94-158)||(71189-71253)
[»] chr8 (3 HSPs)
chr8 (114-158)||(42200684-42200728)
chr8 (83-158)||(35061631-35061706)
chr8 (94-158)||(8137930-8137994)
[»] chr7 (4 HSPs)
chr7 (83-159)||(17883882-17883958)
chr7 (94-158)||(5526720-5526784)
chr7 (110-150)||(42753445-42753485)
chr7 (124-160)||(49172317-49172353)
[»] chr5 (7 HSPs)
chr5 (82-158)||(20175720-20175796)
chr5 (94-158)||(28344549-28344613)
chr5 (81-158)||(6489002-6489079)
chr5 (112-158)||(14232860-14232908)
chr5 (114-167)||(17064886-17064939)
chr5 (114-150)||(34860168-34860204)
chr5 (114-158)||(40715971-40716015)
[»] chr3 (3 HSPs)
chr3 (110-162)||(31316628-31316680)
chr3 (114-155)||(21549036-21549077)
chr3 (114-163)||(29687072-29687121)
[»] chr2 (5 HSPs)
chr2 (110-156)||(1238159-1238205)
chr2 (113-158)||(23983999-23984044)
chr2 (94-163)||(30836301-30836370)
chr2 (114-158)||(27244652-27244696)
chr2 (95-150)||(34242825-34242881)


Alignment Details
Target: chr6 (Bit Score: 127; Significance: 1e-65; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 6626411 - 6626200
Alignment:
Q  1 aaaatgttttaactaatttatattgtttgagatttttaactaatttatggatcaatatcaattcttggtaatannnnnnnggtggtagccggagtttgaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||        |||||||||||||||||||    
T  6626411 aaaatgttttaactaatttatattgtttgagatttttaactaatttatggatcaatatcaattcttggtattattttttttgtggtagccggagtttgaa 6626312  T
Q  101 cccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaattcttggtaatgttttatatgcaatgaaactgtcataa 200  Q
     || |||||||||||||||||| |||||| ||| ||||||||| ||||||  ||         |||||||||||||||||||||||||||||||||||||    
T  6626311 tccgaaattttgtatataatatgcattgttcctgtcaattgagttaagct--cg---------tcttggtaatgttttatatgcaatgaaactgtcataa 6626223  T
Q  201 ttggtaattaaaattgaaataag 223  Q
    |||||||||||||||||||||||    
T  6626222 ttggtaattaaaattgaaataag 6626200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 6626551 - 6626517
Alignment:
Q  23 ttgtttgagatttttaactaatttatggatcaata 57  Q
    ||||||||||||| |||||||||||||||||||||    
T  6626551 ttgtttgagatttctaactaatttatggatcaata 6626517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 115 - 160
Target Start/End: Original strand, 7470758 - 7470803
Alignment:
Q  115 tataatatacattgtccctatcaattgagctaagcttacgaggata 160  Q
    |||||||| |||| |||||| ||| |||||||||||||||||||||    
T  7470758 tataatatgcattatccctaccaactgagctaagcttacgaggata 7470803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 17382123 - 17382074
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgaggataaat 163  Q
    ||||| |||||||||||| || ||| ||||||||||| ||||||||||||    
T  17382123 atatattatacattgtccataccaactgagctaagctcacgaggataaat 17382074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 90 - 162
Target Start/End: Complemental strand, 29283878 - 29283806
Alignment:
Q  90 cggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaa 162  Q
    |||||||||||||| | |  ||| ||||| ||||||||||| ||| ||| |||| |||||||||||| |||||    
T  29283878 cggagtttgaaccctagaccttgcatatattatacattgtctctaccaactgagttaagcttacgagcataaa 29283806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 51031934 - 51031873
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacga 155  Q
    |||||||||| | |||||||||||||||| ||||||| ||||||||||||||||| ||||||    
T  51031934 gtttgaaccctagattttgtatataatatgcattgtcactatcaattgagctaagtttacga 51031873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 143
Target Start/End: Complemental strand, 17669716 - 17669655
Alignment:
Q  82 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgag 143  Q
    ||||| ||||||||||||||||  ||  ||| ||||| ||||||||||||||||||| ||||    
T  17669716 gtggtggccggagtttgaaccccgaaccttgcatatattatacattgtccctatcaactgag 17669655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 8797084 - 8797132
Alignment:
Q  15 aatttatattgtttgagatttttaactaatttatggatcaatatcaatt 63  Q
    ||||||||||||||||| |||||||| |||||  |||||||||| ||||    
T  8797084 aatttatattgtttgaggtttttaaccaattttgggatcaatataaatt 8797132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 158
Target Start/End: Original strand, 16033440 - 16033516
Alignment:
Q  82 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    ||||| |||||||||||||||| | |  ||| ||||| ||| ||||||||||||||| ||||  ||||| |||||||    
T  16033440 gtggtggccggagtttgaaccccagaccttgcatatattatgcattgtccctatcaactgagtcaagctcacgagga 16033516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 160
Target Start/End: Original strand, 24506941 - 24506981
Alignment:
Q  120 tatacattgtccctatcaattgagctaagcttacgaggata 160  Q
    |||||||||||  |||||| |||||||||||||||||||||    
T  24506941 tatacattgtctatatcaactgagctaagcttacgaggata 24506981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 11949665 - 11949734
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaat 163  Q
    ||||||||||  ||||||||||||| |||  ||||| | |||||| ||||||||||| ||||||||||||    
T  11949665 gtttgaaccccgaattttgtatatattatgtattgttcttatcaactgagctaagctcacgaggataaat 11949734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 27372425 - 27372382
Alignment:
Q  115 tataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||| ||||||||| | |||||||||||||||||||||||    
T  27372425 tataatatgcattgtcccgaccaattgagctaagcttacgagga 27372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 147
Target Start/End: Original strand, 39093565 - 39093630
Alignment:
Q  82 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaa 147  Q
    ||||||| ||| |||||||||| ||| |||| ||||| ||| |||||||| || ||||||||||||    
T  39093565 gtggtagtcggggtttgaaccctaaactttgcatatattatgcattgtccttaccaattgagctaa 39093630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 63921 - 63857
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||||  ||| |||||||||| ||||||||||||||| ||| |||||||| || |||||||    
T  63921 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgagga 63857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 71253 - 71189
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||||  ||| |||||||||| ||||||||||||||| ||| |||||||| || |||||||    
T  71253 gtttgaacctcaaactttgtatatattatacattgtccctaccaactgagctaaactcacgagga 71189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 42200684 - 42200728
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||    
T  42200684 atatattatacattgtccctatcaactgagctaagctcacgagga 42200728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 158
Target Start/End: Complemental strand, 35061706 - 35061631
Alignment:
Q  83 tggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||| ||||| |||||||||  |||| ||||||||| |||  |||||| ||||||||||| ||||||| |||||||    
T  35061706 tggtggccggggtttgaacctcaaatgttgtatatattatgtattgtctctatcaattgaactaagctcacgagga 35061631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 8137994 - 8137930
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||||| ||| |||| ||||  ||| |||||||| || ||| |||||||||||||||||||    
T  8137994 gtttgaaccccaaactttgcatattttatgcattgtccataccaactgagctaagcttacgagga 8137930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 159
Target Start/End: Complemental strand, 17883958 - 17883882
Alignment:
Q  83 tggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggat 159  Q
    |||| |||||||||||||||||| |  ||| ||||| |||||||| ||| |||||| ||||||||| | ||||||||    
T  17883958 tggtggccggagtttgaacccaagaccttgcatatattatacattatccatatcaagtgagctaaggtcacgaggat 17883882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 5526784 - 5526720
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||||| |||| || |||||| ||| |||||||| || ||| ||||||||||| |||||||    
T  5526784 gtttgaaccccaaatcttatatatattatgcattgtccataccaactgagctaagctcacgagga 5526720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 150
Target Start/End: Original strand, 42753445 - 42753485
Alignment:
Q  110 ttgtatataatatacattgtccctatcaattgagctaagct 150  Q
    ||||||||| ||||||||||||||| |||||||| ||||||    
T  42753445 ttgtatatattatacattgtccctaccaattgagttaagct 42753485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 49172317 - 49172353
Alignment:
Q  124 cattgtccctatcaattgagctaagcttacgaggata 160  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  49172317 cattgtccctatcaactgagctaagctcacgaggata 49172353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 158
Target Start/End: Complemental strand, 20175796 - 20175720
Alignment:
Q  82 gtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    ||||| ||||||||| |||| |  ||| ||||||||| |||||||||||| || ||| ||||||||||| |||||||    
T  20175796 gtggtggccggagttcgaactctgaatcttgtatatattatacattgtccataccaactgagctaagctcacgagga 20175720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 158
Target Start/End: Complemental strand, 28344613 - 28344549
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||||||| |||  ||| ||||| |||||||||||||| |||| ||| |||||||||||||||    
T  28344613 gtttgaaccccaaaccttgcatatattatacattgtccctttcaactgaactaagcttacgagga 28344549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 6489079 - 6489002
Alignment:
Q  81 ggtggtagccggagtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||| ||||| |||||||||| | |  ||| ||||| ||| ||||||||||| ||| ||||||||||| |||||||    
T  6489079 ggtggtggccggggtttgaaccccagaccttgcatatattatgcattgtccctaccaactgagctaagctcacgagga 6489002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 112 - 158
Target Start/End: Complemental strand, 14232908 - 14232860
Alignment:
Q  112 gtatataatatacattgtccctat--caattgagctaagcttacgagga 158  Q
    ||||||| ||||||||||||||||  ||||||||||||||| |||||||    
T  14232908 gtatatattatacattgtccctatatcaattgagctaagctcacgagga 14232860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 167
Target Start/End: Original strand, 17064886 - 17064939
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgaggataaattctt 167  Q
    ||||||||| || | |||||| |||||||| |||||| ||||||||||||||||    
T  17064886 atataatatgcaatatccctaccaattgagttaagctcacgaggataaattctt 17064939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 150
Target Start/End: Original strand, 34860168 - 34860204
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagct 150  Q
    |||||||||||| | ||||||||||||||||||||||    
T  34860168 atataatatacaatatccctatcaattgagctaagct 34860204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Original strand, 40715971 - 40716015
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    ||||| ||| |||||||| |||||||||||||||||| |||||||    
T  40715971 atatattatgcattgtccatatcaattgagctaagctcacgagga 40716015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 110 - 162
Target Start/End: Complemental strand, 31316680 - 31316628
Alignment:
Q  110 ttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaa 162  Q
    |||||||||||||||| | |||||||||| ||||||||||| ||| |||||||    
T  31316680 ttgtatataatatacaatatccctatcaactgagctaagctcacggggataaa 31316628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 155
Target Start/End: Complemental strand, 21549077 - 21549036
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacga 155  Q
    ||||| |||||||||||| |||||| ||||||||||||||||    
T  21549077 atatattatacattgtccatatcaactgagctaagcttacga 21549036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 29687121 - 29687072
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgaggataaat 163  Q
    |||||||||| ||||||| |||||| ||||||||||| ||||||| ||||    
T  29687121 atataatatatattgtccatatcaactgagctaagctcacgaggacaaat 29687072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 156
Target Start/End: Complemental strand, 1238205 - 1238159
Alignment:
Q  110 ttgtatataatatacattgtccctatcaattgagctaagcttacgag 156  Q
    ||||||||| ||| |||||||||||||||||||| |||||| |||||    
T  1238205 ttgtatatattatgcattgtccctatcaattgagttaagctcacgag 1238159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 158
Target Start/End: Complemental strand, 23984044 - 23983999
Alignment:
Q  113 tatataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    |||||| ||| |||||||| || |||||||||||||||||||||||    
T  23984044 tatatattatgcattgtccataccaattgagctaagcttacgagga 23983999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 163
Target Start/End: Original strand, 30836301 - 30836370
Alignment:
Q  94 gtttgaacccaaaattttgtatataatatacattgtccctatcaattgagctaagcttacgaggataaat 163  Q
    ||||||||||  ||||||||| ||| ||| ||||||| ||  ||| ||||||||||||||||||| ||||    
T  30836301 gtttgaaccctgaattttgtaaatattatgcattgtctctgccaactgagctaagcttacgaggacaaat 30836370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 158
Target Start/End: Complemental strand, 27244696 - 27244652
Alignment:
Q  114 atataatatacattgtccctatcaattgagctaagcttacgagga 158  Q
    ||||| ||| ||||||||||||||| ||||||||||| |||||||    
T  27244696 atatattatgcattgtccctatcaactgagctaagctcacgagga 27244652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 150
Target Start/End: Complemental strand, 34242881 - 34242825
Alignment:
Q  95 tttgaacccaaaattttgtata-taatatacattgtccctatcaattgagctaagct 150  Q
    ||||||||| ||| |||| ||| || ||| |||||||||||||||||||||||||||    
T  34242881 tttgaaccccaaactttgcataatattatgcattgtccctatcaattgagctaagct 34242825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University