View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_high_21 (Length: 252)
Name: NF19296_high_21
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_high_21 |
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| [»] chr4 (1 HSPs) |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 6e-83; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 37616288 - 37616506
Alignment:
| Q |
34 |
cttcattatcttgtctttggatgcttgaagcttggatattgaatctttatgatccacatt-aagaagtttaagagtaacattgctcagttttctttcatc |
132 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| |||| ||||||| |||||||||||| |||||| |||||| |
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| T |
37616288 |
cttcattatcttgtctttat-tgcttgaagcttggatattgaaactttatgatccacatttaagatgtttaagggtaacattgctcggttttccttcatc |
37616386 |
T |
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| Q |
133 |
aatattcaatgtgtagtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctctagaattgaatttaactaac |
232 |
Q |
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||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37616387 |
aatattcaatgtggtgtctataaagattttggtgaaaacaataataccagaactttgtttctcagaaagctcattagctctataattgaatttaactaac |
37616486 |
T |
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| Q |
233 |
aaagctttcacctcttctcc |
252 |
Q |
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|||||||||||||||||||| |
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| T |
37616487 |
aaagctttcacctcttctcc |
37616506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 147; Significance: 1e-77; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 6135555 - 6135773
Alignment:
| Q |
34 |
cttcattatcttgtctttggatgcttgaagcttggatattgaatctttatgatccacattaagaagtttaagagtaacattgctcagttttctttcatca |
133 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||| |
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| T |
6135555 |
cttcattatcttgtctttcgatgcttgaagcttggatattgaatctttatgatccacattaagttgttgaagagtaacattgctcagttttccttcatca |
6135654 |
T |
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| Q |
134 |
atattcaatgtgtagtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctctagaattgaatttaactaaca |
233 |
Q |
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||||||| ||| ||| | |||||| | ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||||| | |
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| T |
6135655 |
atattcactgtagcttctgtgaagattctagtgaaatcagtaataccggaactttgtttctcagaaagctcattagctctataattgagtttaactaata |
6135754 |
T |
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| Q |
234 |
aagctttcacctcttctcc |
252 |
Q |
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||||||||||||||||||| |
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| T |
6135755 |
aagctttcacctcttctcc |
6135773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 34 - 252
Target Start/End: Original strand, 6173610 - 6173828
Alignment:
| Q |
34 |
cttcattatcttgtctttggatgcttgaagcttggatattgaatctttatgatccacattaagaagtttaagagtaacattgctcagttttctttcatca |
133 |
Q |
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|||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| ||||||| |
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| T |
6173610 |
cttcataatcttgtatttggatgcttgaagcttggacattgaatctttatgatccacattaagatgttgaagagtaacattgcccagttttccttcatca |
6173709 |
T |
|
| Q |
134 |
atattcaatgtgtagtctataaagattttggtgaaatcagtaataccagaactttgtttctcagaaagctcattagctctagaattgaatttaactaaca |
233 |
Q |
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||||||| |||| ||| | |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | |
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| T |
6173710 |
atattcactgtggcttctgtgaagattctggcgaaatcagtaataccagaactttgtttctcagaaagctcattagctctataattgagtttaactaata |
6173809 |
T |
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| Q |
234 |
aagctttcacctcttctcc |
252 |
Q |
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||||||||||||||||||| |
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| T |
6173810 |
aagctttcacctcttctcc |
6173828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 34 - 93
Target Start/End: Complemental strand, 22083191 - 22083133
Alignment:
| Q |
34 |
cttcattatcttgtctttggatgcttgaagcttggatattgaatctttatgatccacatt |
93 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
22083191 |
cttcattatcttgtctttat-tgcttgaagcttggatattgaatctttatgatccacatt |
22083133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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