View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_high_25 (Length: 233)
Name: NF19296_high_25
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_high_25 |
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Alignment Details
Target: chr6 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 6626399 - 6626588
Alignment:
| Q |
1 |
gttaaaacattttccttttctgattcaattttgtgatattacttctcattatgctacttgatcattcctcattaccaataattagtattgatccttcctt |
100 |
Q |
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| T |
6626399 |
gttaaaacattttccttttctgattcaattttgtgatattacttctcattatgctacttgatcattcctcataaccaataattagtattgatccttcctt |
6626498 |
T |
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| Q |
101 |
caaaaacaaaataatttgtattgatccataaattagttagaaatctcaaacaaaatcagttaaatttgttaaaacatttccttgccgttc |
190 |
Q |
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| T |
6626499 |
caaaaacaaaataatttgtattgatccataaattagttagaaatctcaaacaaaatcagttaaatttgttaaaacatttccttgccgttc |
6626588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 72
Target Start/End: Original strand, 6626628 - 6626695
Alignment:
| Q |
5 |
aaacattttccttttctgattcaattttgtgatattacttctcattatgctacttgatcattcctcat |
72 |
Q |
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| T |
6626628 |
aaacatttcctttttctcattcatttttgtgatattcattctcattatgctacttgataatttctcat |
6626695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 153
Target Start/End: Original strand, 6626355 - 6626389
Alignment:
| Q |
119 |
tattgatccataaattagttagaaatctcaaacaa |
153 |
Q |
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| T |
6626355 |
tattgatccataaattagttaaaaatctcaaacaa |
6626389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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