View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19296_high_6 (Length: 441)
Name: NF19296_high_6
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_high_6 |
 | |
|
| [»] scaffold0200 (1 HSPs) |
| | |
|
| [»] scaffold0119 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 416; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 6 - 425
Target Start/End: Original strand, 1884451 - 1884870
Alignment:
| Q |
6 |
acatcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaag |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884451 |
acatcatcaaaaatttcaagtccaagatggaataataatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaag |
1884550 |
T |
|
| Q |
106 |
atgtttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcatta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884551 |
atgtttcaatccttcggattgatcactttgttagagtcattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcatta |
1884650 |
T |
|
| Q |
206 |
tgcaactaaatggctacaagggttggttagtgaaacatcaatcacattcgatgaaacgagcaattgcggtaatagtaatagtagtagtagtggtagcggt |
305 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884651 |
tgcaactaaatggctacaagagttggttagtgaaacatcaatcacattcgatgaaacgagcaattgcggtaatagtaatagtagtagtagtggtagcggt |
1884750 |
T |
|
| Q |
306 |
agctggattaaaggcggcggtggacttcacatgattgtagcaggtggaactagagacgaaacttcaagtcttcaagctaaagaacaaaggatgataattg |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1884751 |
agctggattaaaggcggcggtggacttcacatgattgtagcaggtggaactagagacgaaacttcaagtcttcaagctaaagaacaaaggatgataattg |
1884850 |
T |
|
| Q |
406 |
agagtcttataagcattatt |
425 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
1884851 |
agagtcttataagcattatt |
1884870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 207
Target Start/End: Complemental strand, 1266554 - 1266390
Alignment:
| Q |
43 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
142 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
|
|
| T |
1266554 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
1266455 |
T |
|
| Q |
143 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
207 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |||| || |||||||| |||||||||| |
|
|
| T |
1266454 |
tattattgccattaatgtaaagggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
1266390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 147
Target Start/End: Original strand, 30729310 - 30729416
Alignment:
| Q |
41 |
taatgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttaga |
140 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||| |||| |||| ||||||| |||||| ||| | || ||| |||||||||||||||||||| |
|
|
| T |
30729310 |
taatgatatgaaagatacaagtcccagtaggaatgggctagctcctactgattgaatgtttgataatgcgccgattcttaggattgatcactttgttaga |
30729409 |
T |
|
| Q |
141 |
gtcatta |
147 |
Q |
| |
|
|| |||| |
|
|
| T |
30729410 |
gttatta |
30729416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 48 - 222
Target Start/End: Complemental strand, 37214749 - 37214575
Alignment:
| Q |
48 |
atgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcatta |
147 |
Q |
| |
|
|||||||| |||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
37214749 |
atgaaagactcaagcccgagtaggaatcagctagttcctcctgattggtggtttgaagatgtttcaatccttaggattgatcactttgttagagtcatta |
37214650 |
T |
|
| Q |
148 |
ctgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatgcaactaaatggctac |
222 |
Q |
| |
|
|||||||||||||||| || ||||||||||| | |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
37214649 |
ctgctattaaggtaaaaggcatgagatttgaactgattggtgctggaataatgcattatgcaactaaatggctac |
37214575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0200 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0200
Description:
Target: scaffold0200; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 20405 - 20569
Alignment:
| Q |
43 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
142 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| ||||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||||||||| |
|
|
| T |
20405 |
atgatatgaaagataaaagttcaagcaggaatcagctagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgttagagt |
20504 |
T |
|
| Q |
143 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
207 |
Q |
| |
|
|||| ||| ||||| ||||| |||||||||||||| |||| || |||||||| |||||||||| |
|
|
| T |
20505 |
tattattgccattaatgtaaatggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
20569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0119 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: scaffold0119
Description:
Target: scaffold0119; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 43 - 207
Target Start/End: Original strand, 45148 - 45312
Alignment:
| Q |
43 |
atgatatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagt |
142 |
Q |
| |
|
||||||||||||||| |||| |||| |||||||| |||||| | ||||||| | |||||||||||| |||| ||| |||||| ||||||||| ||||| |
|
|
| T |
45148 |
atgatatgaaagataaaagttcaagcaggaatcagttagttcattctgattgattgtttgaagatgtgccaattcttaggattggtcactttgtcagagt |
45247 |
T |
|
| Q |
143 |
cattactgctattaaggtaaagggaatgagatttgagttaattggtgctgcaataatgcattatg |
207 |
Q |
| |
|
|||| ||| ||||| |||||||||||||||||||| |||| || |||||||| |||||||||| |
|
|
| T |
45248 |
tattattgccattaatgtaaagggaatgagatttgaattaaatgatgctgcaaatatgcattatg |
45312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 16140458 - 16140559
Alignment:
| Q |
46 |
atatgaaagatacaagtccaagtaggaatcaactagttcctcctgattggtggtttgaagatgtttcaatccttcggattgatcactttgttagagtcat |
145 |
Q |
| |
|
|||||||||||||||| || || |||||| |||| |||| |||||||| ||||||||||| | || ||| |||||||||||||||||||||| || |
|
|
| T |
16140458 |
atatgaaagatacaagacctagcaggaatgggctagctccttctgattggatgtttgaagatgcattgattcttgggattgatcactttgttagagttat |
16140557 |
T |
|
| Q |
146 |
ta |
147 |
Q |
| |
|
|| |
|
|
| T |
16140558 |
ta |
16140559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University