View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_low_12 (Length: 394)
Name: NF19296_low_12
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 17 - 381
Target Start/End: Original strand, 39940719 - 39941085
Alignment:
| Q |
17 |
cactctaaactctctataaaatacaaagagcaagtcaacctaggattacgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactca-acaca |
115 |
Q |
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| T |
39940719 |
cactctaaactctctataaaatacaaagagcaagtcaacctaggattacgaaagcgacttcattaacaatcgcaaaatcaaaaccaaacactctgataca |
39940818 |
T |
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| Q |
116 |
ac-acactcttcactcatcttcatcgtaacatggcttcagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaa |
214 |
Q |
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| T |
39940819 |
accacactcttcactcatcttcatcgtaacatggctccagaacctcatcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaa |
39940918 |
T |
|
| Q |
215 |
aggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgt |
314 |
Q |
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| T |
39940919 |
aagggtttgaaggaaaatctgttccttcgtggcagaaacaggttactgttagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgt |
39941018 |
T |
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| Q |
315 |
gatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggttc |
381 |
Q |
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| T |
39941019 |
gatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggttc |
39941085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 64 - 346
Target Start/End: Original strand, 39956445 - 39956731
Alignment:
| Q |
64 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaac-acactcttcactcat---cttcatcgtaacatggcttcagaacct |
159 |
Q |
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| T |
39956445 |
acgaaagcgacttcattaacaatcgcaaaacaaaaaccaaacactcaacacaaccacacttttcactcatcatcttcatcgtaacatggcttcagaacct |
39956544 |
T |
|
| Q |
160 |
catcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggtta |
259 |
Q |
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| T |
39956545 |
catcgacgtgacgtcgaaacctccgatgaacaacttgatgagatttccattgaaaaagggtttgaaggaaaatctgttccttcgtggcagaaacaggtta |
39956644 |
T |
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| Q |
260 |
cggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
346 |
Q |
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| T |
39956645 |
cggctagggcaatagtcgtgagtatcatgctatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattc |
39956731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 101; Significance: 6e-50; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 184 - 380
Target Start/End: Complemental strand, 28750890 - 28750694
Alignment:
| Q |
184 |
gatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagta |
283 |
Q |
| |
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||||||||||| || |||||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||| || |||||||||||| | | |||| |
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| T |
28750890 |
gatgaacaactcgaggagatttctgtggaaaaagggtttgaaggaacatctgttcctacgtggcagaaacaggtcactgttagggcaatatttgcgagtc |
28750791 |
T |
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| Q |
284 |
tcatgttatcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
380 |
Q |
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| T |
28750790 |
tcatgttgtcggtgatgttcacgtttatcgtgatgaagttgaatctcacaactgggattattccttcgttgaatgtttctgctggattgttagggtt |
28750694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 209 - 380
Target Start/End: Complemental strand, 28742020 - 28741849
Alignment:
| Q |
209 |
ttgaaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcacttt |
308 |
Q |
| |
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||||||| ||||||||||||||| ||||||| |||||||||| |||||||| ||||||||| || | |||||| ||||||| || || |||||||| || |
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| T |
28742020 |
ttgaaaaagggtttgaaggaaaacttgttcctacgtggcagaagcaggttactgttagggcattattcgtgagtctcatgttgtcggtaatgttcacgtt |
28741921 |
T |
|
| Q |
309 |
cattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagggtt |
380 |
Q |
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| T |
28741920 |
cattgtgatgaaactgaatctcacaactgggattattccttctttgaatgtttcagctgggttgttagggtt |
28741849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 183 - 377
Target Start/End: Complemental strand, 7963852 - 7963656
Alignment:
| Q |
183 |
cgatgaacaacttgatgagatttccgttgaaaaggggtttgaaggaaaa-tctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgag |
281 |
Q |
| |
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|||||||||| | || ||||||| || ||||| | ||||||||||||| || ||||| ||||||||| | |||| ||||||| | ||| | ||||| |
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| T |
7963852 |
cgatgaacaattagaggagatttatgtggaaaaagtgtttgaaggaaaaatcaattcctatatggcagaaaaatgttatggttaggcctatattcgtgag |
7963753 |
T |
|
| Q |
282 |
tatcatgtta-tcagtgatgttcactttcattgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctgggttgttagg |
377 |
Q |
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| T |
7963752 |
tctcatgttggtcgatgatgttcacattcatcatgatgaatctgaatctcacaactgggattattcattcgttgaatgtttttgctgggttgttagg |
7963656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 367
Target Start/End: Complemental strand, 7961298 - 7961143
Alignment:
| Q |
212 |
aaaaggggtttgaaggaaaatctgttccttcgtggcagaaacaggttacggttagggcaatagtagtgagtatcatgttatcagtgatgttcactttcat |
311 |
Q |
| |
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|||| ||||||||||||||||| |||||| |||||| || | || ||||||| ||| ||| | |||||| || | || | || |||||||| ||||| |
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| T |
7961298 |
aaaaagggtttgaaggaaaatcagttcctatgtggcaccaaaatgtcacggttatggctatattcgtgagtctcgttttgacggtaatgttcacattcat |
7961199 |
T |
|
| Q |
312 |
tgtgatgaagctgaatctcactactgggattattccctctttgaatgtttcggctg |
367 |
Q |
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||||||||||| |||||||| ||||| |||||||| || || |||||||| |||| |
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| T |
7961198 |
cgtgatgaagctcaatctcacaactggaattattccttcattaaatgtttctgctg |
7961143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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