View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_low_13 (Length: 385)
Name: NF19296_low_13
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 14 - 374
Target Start/End: Original strand, 16173254 - 16173616
Alignment:
| Q |
14 |
catttggcacggcatcacaactaacattttgtataatttatgcagtattctacacatttaccttcgaaggaaatattccgctcaaagcttggagttattc |
113 |
Q |
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| T |
16173254 |
catttggcactgcatcacaactaacattttgtataatttatgcagtattctacacatttaccttcgaaggaaatattccgctcaaagcttggagttattc |
16173353 |
T |
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| Q |
114 |
gattcatactccatgaatatcgtccaaaaaatacaagcaagaagagaaagtcaagtgaacctgctaccgaagacgaagtacattaaatttataatttaaa |
213 |
Q |
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| T |
16173354 |
gattcatactccatgaatatcgtccaaaaaatacaagcaagaagagaaaatcaagtgaacctgctaccgaagacgaagtacattaaatttataattcaaa |
16173453 |
T |
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| Q |
214 |
tcaagaaatgaaccagccatttg--nnnnnnntagtcgttattttatacttttgtgtttttccttgacggccaagtttcttcgaaaaactagttgatata |
311 |
Q |
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| T |
16173454 |
tcaagaaatgaaccagccatttgaaaaaaaaatagtcgttattttatacttttgtgtttttccttgacggccaagtttcttcgaaaaactagtttttata |
16173553 |
T |
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| Q |
312 |
cttgtgttttgcttcaaagtttgtgatctttcaatttgatgttcttgcacacttttggcttca |
374 |
Q |
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| T |
16173554 |
cttgtgttttgcttcacagtttgtgatctttcaatttgatgttcttgcacacttttggcttca |
16173616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 165
Target Start/End: Original strand, 20994844 - 20994977
Alignment:
| Q |
32 |
aactaacattttgtataatttatgcagtattctacacatttaccttcgaaggaaatattccgctcaaagcttggagttattcgattcatactccatgaat |
131 |
Q |
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| T |
20994844 |
aactaaaattttgtataatttatgcagttttctacacatataccttcgaaccaaaaattccgctcaaagcctgaactgattcgattcatactccatgaat |
20994943 |
T |
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| Q |
132 |
atcgtccaaaaaatacaagcaagaagagaaagtc |
165 |
Q |
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| T |
20994944 |
ctcttccaagcaaaagaagcaaggagataaagtc |
20994977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 131
Target Start/End: Original strand, 19413126 - 19413203
Alignment:
| Q |
54 |
tgcagtattctacacatttaccttcgaaggaaatattccgctcaaagcttggagttattcgattcatactccatgaat |
131 |
Q |
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| T |
19413126 |
tgcagtattctacacatataccatcgaatagaaaatttcgttcaaagcttggagtgattcaatttatactccatgaat |
19413203 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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