View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19296_low_16 (Length: 338)

Name: NF19296_low_16
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19296_low_16
NF19296_low_16
[»] chr7 (3 HSPs)
chr7 (135-319)||(28470210-28470394)
chr7 (1-72)||(28470457-28470528)
chr7 (200-301)||(5230011-5230112)
[»] chr8 (4 HSPs)
chr8 (194-313)||(12811915-12812034)
chr8 (224-320)||(12772268-12772364)
chr8 (224-320)||(12791128-12791224)
chr8 (225-285)||(34830908-34830968)
[»] chr6 (1 HSPs)
chr6 (208-319)||(22611522-22611633)
[»] chr1 (1 HSPs)
chr1 (208-320)||(46039592-46039704)
[»] chr2 (2 HSPs)
chr2 (246-313)||(30642895-30642961)
chr2 (234-319)||(5546362-5546447)
[»] chr5 (1 HSPs)
chr5 (213-319)||(20543499-20543605)
[»] chr4 (2 HSPs)
chr4 (246-320)||(42506647-42506721)
chr4 (225-301)||(45671441-45671517)
[»] chr3 (1 HSPs)
chr3 (237-320)||(38396738-38396821)


Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 135 - 319
Target Start/End: Complemental strand, 28470394 - 28470210
Alignment:
Q  135 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470394 ggtgagattttttaatattagatgaatgaaaaagagagagaagggtaccctgaagttgaacttgcaaattcagaaagctttccacgacttgagaaaatga 28470295  T
Q  235 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470294 taagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 28470210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 72
Target Start/End: Complemental strand, 28470528 - 28470457
Alignment:
Q  1 gaagaagttaaaagtatcagaaattgaaaagatctaaagctaagagaggtttatattgggatttgaaccaac 72  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28470528 gaagaagttaaaagtatcagaaattgaaaagatctaaagctaagagaggtttatattgggatttgaaccaac 28470457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 200 - 301
Target Start/End: Complemental strand, 5230112 - 5230011
Alignment:
Q  200 aaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttctt 299  Q
    ||||||| |||||||||||||| | ||||| ||||||||||||| |||||||||||| ||||| || |||||||| ||||| || || | ||||||||||    
T  5230112 aaattcataaagctttccacgagtggagaagatgataagagcaacctcagcatcacaaagaacagaaagttcataagctttcttaagaagaccatttctt 5230013  T
Q  300 ct 301  Q
    ||    
T  5230012 ct 5230011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 194 - 313
Target Start/End: Original strand, 12811915 - 12812034
Alignment:
Q  194 acttgcaaattcagaaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaacca 293  Q
    |||| |||||||| | || || ||||| || |||||||||||||| ||||  ||||||||||| ||||| || |||||||| ||||| || |||||||||    
T  12811915 acttccaaattcatagagtttgccacggctagagaaaatgataagggcaacttcagcatcacagagaacagacagttcataagctttcttgagcaaacca 12812014  T
Q  294 tttcttctttttgagaaagt 313  Q
    ||||||||||||||||||||    
T  12812015 tttcttctttttgagaaagt 12812034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 12772364 - 12772268
Alignment:
Q  224 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgt 320  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || ||||||    
T  12772364 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgt 12772268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 224 - 320
Target Start/End: Complemental strand, 12791224 - 12791128
Alignment:
Q  224 tgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgt 320  Q
    ||||||||  |||||||||| ||||||||||||||  ||||| |||||| |||| || |||| ||||||||||||||| |||||||| || ||||||    
T  12791224 tgagaaaacaataagagcaacctcagcatcacataacactgacagttcaaaggccttcttcaacaaaccatttcttctctttgagaatgttacttgt 12791128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 285
Target Start/End: Original strand, 34830908 - 34830968
Alignment:
Q  225 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttca 285  Q
    ||||| |||||||||||||  ||||||||||| ||||| || |||||||| ||||||||||    
T  34830908 gagaagatgataagagcaacttcagcatcacaaagaacagaaagttcataagcttttttca 34830968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 22611633 - 22611522
Alignment:
Q  208 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 307  Q
    ||||||| ||||| ||||| ||||||||||| ||||  |||||||||||||||||  | || ||| ||||||| |||| ||| ||| ||||||| |||||    
T  22611633 aaagcttgccacggcttgaaaaaatgataagtgcaacttcagcatcacatagaacacaaagctcaaaggctttcttcaacaatccacttcttctctttga 22611534  T
Q  308 gaaagtaacttg 319  Q
    ||| || |||||    
T  22611533 gaatgttacttg 22611522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 320
Target Start/End: Original strand, 46039592 - 46039704
Alignment:
Q  208 aaagctttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttga 307  Q
    ||||||| ||| |||| ||||| |||||||||||||  |||||||||||||  || || |||||| | ||||| |||| ||||||| ||||||| |||||    
T  46039592 aaagcttgccaagactggagaagatgataagagcaacttcagcatcacataacacagaaagttcaaaagctttcttcaacaaaccacttcttctctttga 46039691  T
Q  308 gaaagtaacttgt 320  Q
     || || ||||||    
T  46039692 aaatgttacttgt 46039704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 313
Target Start/End: Original strand, 30642895 - 30642961
Alignment:
Q  246 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagt 313  Q
    |||||||||||  |||| || |||||||| |||||||| ||||||||||||||||| |||||||||||    
T  30642895 tcagcatcacag-gaacagacagttcataagcttttttgagcaaaccatttcttctctttgagaaagt 30642961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 234 - 319
Target Start/End: Complemental strand, 5546447 - 5546362
Alignment:
Q  234 ataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttg 319  Q
    ||||||||||  || |||||||| ||||| || | |||||| ||||| |||| ||||||||||||||||||  ||||||| |||||    
T  5546447 ataagagcaacttctgcatcacaaagaacagataattcatatgctttcttcaacaaaccatttcttcttttgcagaaagttacttg 5546362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 20543499 - 20543605
Alignment:
Q  213 tttccacgacttgagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaag 312  Q
    |||||||| || |||||||| || ||||||| |||||||||||| || |  ||||||||||| || || |||||||  ||||||||||| ||||  || |    
T  20543499 tttccacggctagagaaaataatgagagcaacctcagcatcacaaaggagagagagttcataagccttcttcagcattccatttcttctctttgcaaatg 20543598  T
Q  313 taacttg 319  Q
    |||||||    
T  20543599 taacttg 20543605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 246 - 320
Target Start/End: Original strand, 42506647 - 42506721
Alignment:
Q  246 tcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgt 320  Q
    ||||||||||| || ||||| |||||| |||| ||||| ||||  ||||||||||| ||||||||||| ||||||    
T  42506647 tcagcatcacaaagcactgaaagttcaaaggcctttttaagcagtccatttcttctctttgagaaagttacttgt 42506721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 301
Target Start/End: Complemental strand, 45671517 - 45671441
Alignment:
Q  225 gagaaaatgataagagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttct 301  Q
    ||||| |||||||||||||  ||||||||||| |||||||| |||||||| || || || || | ||||||||||||    
T  45671517 gagaagatgataagagcaacttcagcatcacaaagaactgaaagttcataagccttcttgagtacaccatttcttct 45671441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 320
Target Start/End: Complemental strand, 38396821 - 38396738
Alignment:
Q  237 agagcaatctcagcatcacatagaactgagagttcataggcttttttcagcaaaccatttcttctttttgagaaagtaacttgt 320  Q
    ||||||| ||| |||||||| ||||| || |||||||| ||||||||||  | ||||||||||| |||||  || |||||||||    
T  38396821 agagcaacctctgcatcacaaagaacagaaagttcataagcttttttcaaaagaccatttcttcgttttgcaaaggtaacttgt 38396738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University