View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19296_low_19 (Length: 259)
Name: NF19296_low_19
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_low_19 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 41853243 - 41853003
Alignment:
| Q |
1 |
aacataaatatgttgcctacaacccataaacaagcaagtaatttagttaaaagcttattcaataggcgtttatcatataaaatactatgacattgctgtt |
100 |
Q |
| |
|
|||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853243 |
aacaaaaatatgttgtctacaacccataaacaagcaagtaatttagttaaaagcttattcaataggcgtttatcatataaaatactatgacattgctgtt |
41853144 |
T |
|
| Q |
101 |
gaacaagtcaaacacacgattttgcaacaaactatgaagattaaaaagaaatataaatatgcacaactaaaaaaggtgacaacttcaaatattcattaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41853143 |
gaacaagtcaaacacacgattttgcaacaaactatgaagattaaaaagaaatataaatatgcacaactaaaaaaggtgacaacttcaaatattcattaaa |
41853044 |
T |
|
| Q |
201 |
ccagacagataatttaaagtagtattgatcagtcacattca |
241 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41853043 |
ccagacatataatttaaagtagtattgatcagtcacattca |
41853003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University