View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_low_22 (Length: 249)
Name: NF19296_low_22
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 230
Target Start/End: Complemental strand, 9829460 - 9829235
Alignment:
| Q |
5 |
gcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgca |
104 |
Q |
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| T |
9829460 |
gcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgca |
9829361 |
T |
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| Q |
105 |
tctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttg |
204 |
Q |
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| T |
9829360 |
tctgattgtgaagacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatctg |
9829261 |
T |
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| Q |
205 |
atatgcaaggtagtcaatgtaattct |
230 |
Q |
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| T |
9829260 |
atatgcaaggtagtcaatgtaattct |
9829235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 16 - 214
Target Start/End: Complemental strand, 9755993 - 9755799
Alignment:
| Q |
16 |
caacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtga |
115 |
Q |
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| T |
9755993 |
caacaaacgatgatgatgaactagaagaggatttgacatacagtgaggaaggaaacatgaatgattttattgttgatgattttgatgcatctgattgtga |
9755894 |
T |
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| Q |
116 |
agacatgtctaataattcactagatgggtctaatagtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaagg |
214 |
Q |
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| T |
9755893 |
aggcatgtctaatacttcacaagatgagtctaatagtgacgcagaat----tactagtaacaagaactcttattttcaagatgtgtctgatatgcaagg |
9755799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 50 - 218
Target Start/End: Complemental strand, 9814122 - 9813957
Alignment:
| Q |
50 |
gacatacagtgaggaaggaaacaatattgattttattggtgatgattttgatgcatctgattgtgaagacatgtctaataattcactagatgggtctaat |
149 |
Q |
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|||| ||| |||||||| |||||||| ||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |
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| T |
9814122 |
gacacacaatgaggaagaaaacaatagtgattttattg---attattttgatgcatctgattgtgaaggcatgtctaataattcacgagatgagtctagc |
9814026 |
T |
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| Q |
150 |
agtgacgcggaatctaatacgagtaacaagaattctaattttcaagatgtatttgatatgcaaggtagt |
218 |
Q |
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| T |
9814025 |
agtgacgcagaatctagttcgtgtagcaaggattcttatttgcaagatgtatctgatatgcaaggtagt |
9813957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 9708628 - 9708475
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
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||||||| |||||||||| ||||||||||||||| ||| || ||||| | |||| |||||||||| ||| || ||||||||||| ||||||| |||| |
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| T |
9708628 |
atcagcagagtattccaaaaaatgatgatgatgacctaggagtggatttgtcatatagtgaggaagataaccttagtgattttattgttgatgatgttga |
9708529 |
T |
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| Q |
101 |
tgcatctgattgtgaagacatgtctaataattcactagatgggtctaatagtga |
154 |
Q |
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| T |
9708528 |
tgcatctgattgtgaagacatatctgataagtcacaggaagagtctaatagtga |
9708475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9755380 - 9755264
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9755380 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttga |
9755281 |
T |
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| Q |
101 |
tgcatctgattgtgaag |
117 |
Q |
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| T |
9755280 |
tttatctggttgtgaag |
9755264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9828855 - 9828739
Alignment:
| Q |
1 |
atcagcaaagtattccaacaaatgatgatgatgaattagaagaggattcgacatacagtgaggaaggaaacaatattgattttattggtgatgattttga |
100 |
Q |
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|||||||||||||||||||||||||||||| ||||| | |||||| | || | ||||||||||||||| | | |||||||| |||||||||||| |
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| T |
9828855 |
atcagcaaagtattccaacaaatgatgatgctgaatcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttga |
9828756 |
T |
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| Q |
101 |
tgcatctgattgtgaag |
117 |
Q |
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| T |
9828755 |
tgtatctagttgtgaag |
9828739 |
T |
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