View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19296_low_28 (Length: 201)

Name: NF19296_low_28
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19296_low_28
NF19296_low_28
[»] chr7 (12 HSPs)
chr7 (15-146)||(22069953-22070084)
chr7 (15-78)||(660944-661007)
chr7 (15-144)||(22080712-22080841)
chr7 (105-146)||(22088435-22088476)
chr7 (22-146)||(22063484-22063608)
chr7 (99-146)||(16839562-16839609)
chr7 (15-138)||(20351945-20352068)
chr7 (99-146)||(16846645-16846692)
chr7 (99-141)||(18326068-18326110)
chr7 (92-146)||(20140992-20141046)
chr7 (109-146)||(6864997-6865034)
chr7 (92-145)||(20126362-20126415)
[»] chr1 (1 HSPs)
chr1 (27-144)||(15961072-15961189)


Alignment Details
Target: chr7 (Bit Score: 68; Significance: 1e-30; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 15 - 146
Target Start/End: Complemental strand, 22070084 - 22069953
Alignment:
Q  15 caaaggcaatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgaggagggagtaactcagaatgcgtctcggtgcccaaat 114  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||| ||| | ||||||  ||||||| |  |||| || ||| |||||||| |||||||    
T  22070084 caaagacaatcctttaaaacacttagatttggtataacaaatggcacttcatcgaaaccgtgaggaggcaacaacttagtatgtgtctcggtacccaaat 22069985  T
Q  115 taagtgaaataatcacaaattgctcaatagta 146  Q
     |||||||||||||||||||| ||||||||||    
T  22069984 caagtgaaataatcacaaattcctcaatagta 22069953  T

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Target: chr7; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 15 - 78
Target Start/End: Original strand, 660944 - 661007
Alignment:
Q  15 caaaggcaatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgag 78  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  660944 caaagacaatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgag 661007  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 22080841 - 22080712
Alignment:
Q  15 caaaggcaatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgaggagggagtaactcagaatgcgtctcggtgcccaaat 114  Q
    ||||| ||||||||||||| ||||||||||||||||||||| || | |||   |||||   |||||||  | |||| || ||| ||||||||||||||||    
T  22080841 caaagacaatcctttaacatacttagatttggtataacaaagggaacttcaacgaaactgtgaggaggccgaaacttagcatgtgtctcggtgcccaaat 22080742  T
Q  115 taagtgaaataatcacaaattgctcaatag 144  Q
     |||||||||||||| |||||| |||||||    
T  22080741 caagtgaaataatcataaattgttcaatag 22080712  T

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Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 22088476 - 22088435
Alignment:
Q  105 gtgcccaaattaagtgaaataatcacaaattgctcaatagta 146  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  22088476 gtgcccaaatcaagtgaaataatcacaaattgctcaatagta 22088435  T

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Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 22 - 146
Target Start/End: Complemental strand, 22063608 - 22063484
Alignment:
Q  22 aatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgaggagggagtaactcagaatgcgtctcggtgcccaaattaagtga 121  Q
    |||| ||||| |||||||| ||||||||||||||||| | |||   ||||||  ||||||| |  || | || ||  | ||| |||||||||| ||||||    
T  22063608 aatcatttaagacacttagttttggtataacaaatggtacttcactgaaaccatgaggaggaaacaatttagtatatgcctcagtgcccaaatcaagtga 22063509  T
Q  122 aataatcacaaattgctcaatagta 146  Q
    |||||||||||||||| ||||||||    
T  22063508 aataatcacaaattgcccaatagta 22063484  T

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Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 16839562 - 16839609
Alignment:
Q  99 gtctcggtgcccaaattaagtgaaataatcacaaattgctcaatagta 146  Q
    ||||| |||||||||| |||||||||||||||||||||||||| ||||    
T  16839562 gtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagta 16839609  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 20352068 - 20351945
Alignment:
Q  15 caaaggcaatcctttaacacacttagatttggtataacaaatggcatttcttggaaacctcgaggagggagtaactcagaatgcgtctcggtgcccaaat 114  Q
    ||||| |||||||||||||||||||||| ||||| ||| | ||||| ||||  ||||||| |||| || |  | |  ||||||||| || ||| ||||||    
T  20352068 caaagacaatcctttaacacacttagatatggtacaacgattggcacttctgtgaaaccttgaggtggcaaaagcagagaatgcgtttcagtgtccaaat 20351969  T
Q  115 taagtgaaataatcacaaattgct 138  Q
     ||| ||||| |||||||||||||    
T  20351968 caagagaaatgatcacaaattgct 20351945  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 146
Target Start/End: Original strand, 16846645 - 16846692
Alignment:
Q  99 gtctcggtgcccaaattaagtgaaataatcacaaattgctcaatagta 146  Q
    ||||| |||||||||| ||| |||||||||||||||||||||| ||||    
T  16846645 gtctccgtgcccaaatcaagagaaataatcacaaattgctcaacagta 16846692  T

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Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 99 - 141
Target Start/End: Complemental strand, 18326110 - 18326068
Alignment:
Q  99 gtctcggtgcccaaattaagtgaaataatcacaaattgctcaa 141  Q
    ||||| |||||||||| ||||||||||||| ||||||||||||    
T  18326110 gtctccgtgcccaaatcaagtgaaataatcgcaaattgctcaa 18326068  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 146
Target Start/End: Original strand, 20140992 - 20141046
Alignment:
Q  92 agaatgcgtctcggtgcccaaattaagtgaaataatcacaaattgctcaatagta 146  Q
    |||||| |||||||||||||||| ||| |||| |||||||||||| |||| ||||    
T  20140992 agaatgtgtctcggtgcccaaataaagagaaacaatcacaaattggtcaagagta 20141046  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 6864997 - 6865034
Alignment:
Q  109 ccaaattaagtgaaataatcacaaattgctcaatagta 146  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  6864997 ccaaatgaagtgaaataatctcaaattgctcaatagta 6865034  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 20126362 - 20126415
Alignment:
Q  92 agaatgcgtctcggtgcccaaattaagtgaaataatcacaaattgctcaatagt 145  Q
    |||||| ||||| |||||||| | ||| ||||||||||||||||||| ||||||    
T  20126362 agaatgtgtctcagtgcccaagtcaagggaaataatcacaaattgctgaatagt 20126415  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 15961189 - 15961072
Alignment:
Q  27 tttaacacacttagatttggtataacaaatggcatttcttggaaacctcgaggagggagtaactcagaatgcgtctcggtgcccaaattaagtgaaataa 126  Q
    ||||||||||||||||||||| ||||| |||| | ||| | |||||||  ||||||    |||| || ||| ||||| |||||||||| |||||||| ||    
T  15961189 tttaacacacttagatttggtttaacatatggaacttcattgaaacctttaggaggtgccaactgagtatgtgtctcagtgcccaaatcaagtgaaacaa 15961090  T
Q  127 tcacaaattgctcaatag 144  Q
    ||||||| || |||||||    
T  15961089 tcacaaaatgttcaatag 15961072  T

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