View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19296_low_3 (Length: 493)

Name: NF19296_low_3
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19296_low_3
NF19296_low_3
[»] chr1 (2 HSPs)
chr1 (17-94)||(16146488-16146565)
chr1 (170-266)||(16146580-16146676)
[»] chr2 (1 HSPs)
chr2 (35-94)||(40119334-40119393)


Alignment Details
Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 16146488 - 16146565
Alignment:
Q  17 aatactctactacagcttcttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga 94  Q
    ||||| |||||||||||||||| ||||| ||||| |||||||||||||||||||| |||||||||||| || ||||||    
T  16146488 aatacactactacagcttcttccccttccggaccactttgtccacctacaaacaacagcttatctccacaaatcttga 16146565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 170 - 266
Target Start/End: Original strand, 16146580 - 16146676
Alignment:
Q  170 ttcttgatcatgctatttaaacgttcaattgtgtacaaccaatcgttaagtacagcaagaagtggtgaacattctttagaaccgtgataaatatgat 266  Q
    ||||||||||||||| |||||||||||||||  |||||| |||| |||| |||||||| |||||||| |||| |||| |||| |||||| |||||||    
T  16146580 ttcttgatcatgctagttaaacgttcaattgcttacaactaatcattaaatacagcaacaagtggtggacatgcttttgaactgtgatatatatgat 16146676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 35 - 94
Target Start/End: Complemental strand, 40119393 - 40119334
Alignment:
Q  35 cttcaccttctggacccctttgtccacctacaaacaaaagcttatctccaaaagtcttga 94  Q
    ||||||||||||||||||||||||||||||| | |||||| ||||||||| ||| |||||    
T  40119393 cttcaccttctggacccctttgtccacctacgaccaaaagtttatctccacaagccttga 40119334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University