View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19296_low_7 (Length: 429)
Name: NF19296_low_7
Description: NF19296
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19296_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 411
Target Start/End: Original strand, 35225331 - 35225728
Alignment:
| Q |
14 |
aaaatcacatgaaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225331 |
aaaatcacatgaaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatga |
35225430 |
T |
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| Q |
114 |
acatgcagaaattagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagc |
213 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225431 |
acatgcagaaattagtcgtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagc |
35225530 |
T |
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| Q |
214 |
atctggaaactagtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttg |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225531 |
atctggaaactagtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttg |
35225630 |
T |
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| Q |
314 |
atatcaccgtgaccacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacacaactgcaacacgaccg |
411 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35225631 |
atgtcaccgtgaccacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacacaactgcaacacgaccg |
35225728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 31172660 - 31172785
Alignment:
| Q |
96 |
cataaacttcattgatgaacatgcagaaattagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttctt |
195 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||||||| ||||| ||||| |||||||| |||| |||||| |||| |||||| |||||||| |
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| T |
31172660 |
catagacttcattgatgaaggtgcagaaattagtggtctcaggatcattgccactcaaatccgggtggcaagttttcatacaattgtagtatgccttctt |
31172759 |
T |
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| Q |
196 |
gatctgctctggtgtagcatctggaa |
221 |
Q |
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||||||||||||||| |||||||||| |
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| T |
31172760 |
gatctgctctggtgttgcatctggaa |
31172785 |
T |
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