View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_high_14 (Length: 411)

Name: NF19297_high_14
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_high_14
NF19297_high_14
[»] chr3 (2 HSPs)
chr3 (19-400)||(534650-535021)
chr3 (19-59)||(51038700-51038740)
[»] chr1 (3 HSPs)
chr1 (19-195)||(35594968-35595142)
chr1 (29-81)||(46066681-46066733)
chr1 (19-81)||(35594366-35594428)
[»] chr4 (3 HSPs)
chr4 (19-195)||(1834271-1834457)
chr4 (19-81)||(1834990-1835052)
chr4 (19-59)||(1964351-1964391)
[»] chr5 (3 HSPs)
chr5 (19-180)||(25055563-25055734)
chr5 (19-81)||(42195283-42195345)
chr5 (19-81)||(42196088-42196150)
[»] chr8 (1 HSPs)
chr8 (19-180)||(22220539-22220709)
[»] scaffold1303 (1 HSPs)
scaffold1303 (19-195)||(1590-1775)
[»] scaffold0045 (2 HSPs)
scaffold0045 (19-132)||(48457-48570)
scaffold0045 (19-81)||(48961-49023)
[»] chr6 (1 HSPs)
chr6 (220-331)||(21094990-21095101)
[»] chr7 (1 HSPs)
chr7 (27-81)||(30439246-30439300)
[»] chr2 (2 HSPs)
chr2 (21-50)||(11996860-11996889)
chr2 (19-51)||(18797398-18797430)
[»] scaffold0321 (1 HSPs)
scaffold0321 (19-59)||(18879-18919)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 400
Target Start/End: Original strand, 534650 - 535021
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnntgaagaaggaaaggaagaaggaaaagcac 118  Q
    ||||||| ||||||||||||||||||||||||||| |||||||||||||||||| ||||||||             ||  ||| ||| ||||||||||||    
T  534650 atgccacatgtgtaattaaccatttttaaaaaataaaaatgtaacctattaaattgttgaatt-------------aaaaaaatgaaaaaggaaaagcac 534736  T
Q  119 gtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttc-----ttcagcatcttttccagccacccaccgttgtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||     ||||||||| ||||||||||||||| |||||||    
T  534737 gtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaacaaaattctccttcaattcttcagcatcctttccagccacccacagttgtga 534836  T
Q  214 tttcggccaccctttgacaaaccaaacacatattattcatcttctcttcattctttatatcctcctaaaatttatgtttagatctgagacattttttaag 313  Q
    ||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| ||| ||||||||||||| || |||| |||||||||||||||||||    
T  534837 ttttggccaccctttgacaaatcaaatacatattattcatcttctcttcattctctatgtcctcctaaaattgatttttacatctgagacattttttaag 534936  T
Q  314 attcaaaactgccacattgtgttagatcctgattaccacgaaaggcttttcatcaaaccaccaccatatatatgtactctccttcat 400  Q
     |||||||| |||||||||||||||||| |||| ||||| ||||| |||||| ||||||||||||  |||||||| |||||||||||    
T  534937 tttcaaaaccgccacattgtgttagatcttgatcaccacaaaaggtttttcaccaaaccaccacc--atatatgtcctctccttcat 535021  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 51038740 - 51038700
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatg 59  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  51038740 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatg 51038700  T

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Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 19 - 195
Target Start/End: Complemental strand, 35595142 - 35594968
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnntgaagaaggaaaggaagaaggaaaagcac 118  Q
    |||||||||||||||||||||||||||||||| || |||| ||||||||||||| ||||||||        |  | ||||||||||||||||||||||||    
T  35595142 atgccacgtgtgtaattaaccatttttaaaaa-taaaaatataacctattaaattgttgaattaaaaaaaatagaaaaggaaaggaagaaggaaaagcac 35595044  T
Q  119 gtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttcttcagcatcttttcc 195  Q
    ||||||||||||||||||||| ||| ||| ||||||||||| ||||||| |||||||||||||||||||||||||||    
T  35595043 gtgagagaatttgtgttcctctttgtacatgttttcatatg-accaaacaaaattctccttcttcagcatcttttcc 35594968  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 46066681 - 46066733
Alignment:
Q  29 tgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    ||||||||||||||||||||||||| ||||||| | | |||||| ||||||||    
T  46066681 tgtaattaaccatttttaaaaaataaaaatgtagcatgttaaattgttgaatt 46066733  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 35594366 - 35594428
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    |||||||||||||||||||||||||  |||||||| |||||| |  | |||||| ||||||||    
T  35594366 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatgtcagattttaaattgttgaatt 35594428  T

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Target: chr4 (Bit Score: 89; Significance: 9e-43; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 1834271 - 1834457
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnn-----------tgaagaaggaaaggaaga 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||                   |||| |||||||||||||    
T  1834271 atgccacgtgtgtaattaaccatttttaaaaaataaaaatgtaacctattaaattgttgaattaaaaaagtgagaaaaaaaatgaaaaaggaaaggaaga 1834370  T
Q  108 aggaaaagcacgtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttcttcagcatcttttcc 195  Q
    |||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||| |||||||||||| ||||||||||||||    
T  1834371 aggaaaagcacgtgagagaatttgtgttcctctttgtacatgttttcatatgaaccaaacaaaattctccttc-tcagcatcttttcc 1834457  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 1835052 - 1834990
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    |||||||||||||||||||||||||  |||||||| |||||| |  | |||||| ||||||||    
T  1835052 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatgtcagattttaaattgttgaatt 1834990  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Complemental strand, 1964391 - 1964351
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatg 59  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  1964391 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatg 1964351  T

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Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 25055563 - 25055734
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnn----------tgaagaaggaaaggaagaa 108  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||                  |||| ||||||||||||||    
T  25055563 atgccacgtgtgtaattaacaatttttaaaaaataaaaatgtaacctattaaattgttgaattaaaaaaatgaaaaaaaaatgaaaaaggaaaggaagaa 25055662  T
Q  109 ggaaaagcacgtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttc 180  Q
    ||||||||||||||||||||||||||||||| ||| |||| |||||||||||||||||| ||||||||||||    
T  25055663 ggaaaagcacgtgagagaatttgtgttcctctttgtacagattttcatatgaaccaaacaaaattctccttc 25055734  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 42195283 - 42195345
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    |||||||||||||||||| |||||||| ||||||| ||||||||| | |||||| ||||||||    
T  42195283 atgccacgtgtgtaattagccattttttaaaaataaaaatgtaacatgttaaattgttgaatt 42195345  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 42196150 - 42196088
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    ||||||| ||||||||||||||||||| ||||||| ||||||||  | |||||| ||||||||    
T  42196150 atgccacatgtgtaattaaccattttttaaaaataaaaatgtaatatgttaaattgttgaatt 42196088  T

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Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 22220539 - 22220709
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnn---------tgaagaaggaaaggaagaag 109  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||||                 |||| |||||||||||||||    
T  22220539 atgccacgtgtgtaattaacaatttttaaaaaataaaaatgtaacctattaaattgttgaattaaaaaaatgaaaaaaaatgaaaaaggaaaggaagaag 22220638  T
Q  110 gaaaagcacgtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttc 180  Q
    |||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||| ||||||||||||    
T  22220639 gaaaagcacgtgagcgaatttgtgttcctctttgtacaggttttcatatgaagcaaacaaaattctccttc 22220709  T

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Target: scaffold1303 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold1303
Description:

Target: scaffold1303; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 1590 - 1775
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaattgnnnnnnn-----------tgaagaaggaaaggaaga 107  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||                   |||| |||||||||||||    
T  1590 atgccacatgtgtaattaaccattttttaaaaataaaaatgtaacctattaaattgttgaattaaaaaaatgaaaaaaaaaatgaaaaaggaaaggaaga 1689  T
Q  108 aggaaaagcacgtgagagaatttgtgttcctcattgcacaggttttcatatgaaccaaactaaattctccttcttcagcatcttttcc 195  Q
    |||||||||||||||||||||||||||| |||  || |||  | |||||||||||||||| |||||||||||||||||||||||||||    
T  1690 aggaaaagcacgtgagagaatttgtgtttctctgtgtaca--tgttcatatgaaccaaacaaaattctccttcttcagcatcttttcc 1775  T

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Target: scaffold0045 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 48457 - 48570
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt-gnnnnnnntgaagaaggaaaggaagaaggaaaagca 117  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||||| ||||||||         |||| |||||||||||||| ||||||||    
T  48457 atgccacgtgtgtaattaaccattttt-aaaaataaaaatgtaacctattaaattgttgaattaaaaataaatgaaaaaggaaaggaagaatgaaaagca 48555  T
Q  118 cgtgagagaatttgt 132  Q
    |||||||||||||||    
T  48556 cgtgagagaatttgt 48570  T

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Target: scaffold0045; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 81
Target Start/End: Complemental strand, 49023 - 48961
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    |||||||||||||||||||||||||  |||||||| |||||| |  | |||||| ||||||||    
T  49023 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatgtcagattttaaattgttgaatt 48961  T

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Target: chr6 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 220 - 331
Target Start/End: Complemental strand, 21095101 - 21094990
Alignment:
Q  220 ccaccctttgacaaaccaaacacatattattcatcttctcttcattctttatatcctcctaaaatttatgtttagatctgagacattttttaagattcaa 319  Q
    ||||||||| |||||||||||||||||||||||   ||||||||||||  || ||||||| |||||||| |||||| | |||||| |||||||| |||||    
T  21095101 ccaccctttaacaaaccaaacacatattattcactgtctcttcattctcgatctcctcctcaaatttatttttagaccggagacagtttttaagtttcaa 21095002  T
Q  320 aactgccacatt 331  Q
    ||| ||||||||    
T  21095001 aaccgccacatt 21094990  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 30439300 - 30439246
Alignment:
Q  27 tgtgtaattaaccatttttaaaaaatataaatgtaacctattaaatcgttgaatt 81  Q
    ||||||||||||||||||||||| ||| ||||||||  | |||||| ||||||||    
T  30439300 tgtgtaattaaccatttttaaaagataaaaatgtaagatgttaaattgttgaatt 30439246  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 21 - 50
Target Start/End: Original strand, 11996860 - 11996889
Alignment:
Q  21 gccacgtgtgtaattaaccatttttaaaaa 50  Q
    ||||||||||||||||||||||||||||||    
T  11996860 gccacgtgtgtaattaaccatttttaaaaa 11996889  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 18797398 - 18797430
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaa 51  Q
    |||||||||||||||||||||||||| ||||||    
T  18797398 atgccacgtgtgtaattaaccattttaaaaaaa 18797430  T

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Target: scaffold0321 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 18879 - 18919
Alignment:
Q  19 atgccacgtgtgtaattaaccatttttaaaaaatataaatg 59  Q
    |||||||||||||||||||||||||  |||||||| |||||    
T  18879 atgccacgtgtgtaattaaccatttaaaaaaaataaaaatg 18919  T

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