View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19297_high_15 (Length: 408)
Name: NF19297_high_15
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 15 - 391
Target Start/End: Original strand, 39259537 - 39259907
Alignment:
| Q |
15 |
tattatgattagaacaaccagcaacagcccttgaaagaataggaagagattgaagctgagaatgagaaaaatgaatgatcataggcatacaaatacaaac |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39259537 |
tattatgattagaacaaccagcaacagcccttgaaagaataggaagagattgaagctgagaatgagaaaaatgaatgatcataggcatacaaatacaaac |
39259636 |
T |
|
| Q |
115 |
agttgaggttgttccaccatctaaacccaataaaacaccatctgagacagaaacattgttaatgtcattctcaaattcccatgtttcaccattcctatac |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39259637 |
agttgaggttgttccaccatctaaacccaataaaacaccatctgagacagaaacattgttaatgtcattctcaaattcccatgtttcaccattcctatac |
39259736 |
T |
|
| Q |
215 |
ctcttcatctccgtctccgaatcaagaatcaattgccccttctccggcatcataagatatttgaattttcaagagaaaaatcaatgttgacggagaagaa |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39259737 |
ctcttca------tctccgaatcaagaatcaattgccccttctccggcatcataagatatttgaattttgaagagaaaaatcaatgttgacggagaagaa |
39259830 |
T |
|
| Q |
315 |
aggacaaggatatggaacaacgagaaaaagactaaatttttacgaattttaaattgaataaatatgtatgtaacaac |
391 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39259831 |
aggacaaggatatggaacaatgagaaaaagactaaatttttacgaattttaaattgaataaatatgtatgtaacaac |
39259907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University