View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_20 (Length: 388)
Name: NF19297_high_20
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 6 - 371
Target Start/End: Complemental strand, 39994340 - 39993975
Alignment:
| Q |
6 |
gagaagaaaaagaaattacccgagatatactatccattgagggggtcccaagcagatctgtgatcagatccaactgatggacaacactttttccaggaaa |
105 |
Q |
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| T |
39994340 |
gagaagaaaaagaaattacccgagatatactatccattgagggggtcccaagcagatctgtgatcagatccaactgatggacaacactttttccaggaaa |
39994241 |
T |
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| Q |
106 |
aagtggtttcccaattaatacttcggcaaagatgcaacctatactccaaatatcaattgccggagtatactacaatcaaaaacttagtgttagcttatta |
205 |
Q |
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| T |
39994240 |
aagtggtttcccaattaatacttcggcaaagatgcaacctatactccaaatatcaattgccggagtatactacaatcaaaaacttagtgttagcttatta |
39994141 |
T |
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| Q |
206 |
gtacacaaatccagcagaaataaatataactagtggattaataatcagcaaaacaggtcatgcatgttgatgggaaagatgacagaaagcatgtattgtg |
305 |
Q |
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| T |
39994140 |
gtacacaaatccagcagaaataaatataactagtggattaataatcagcaaaacaggtcatgcatgttgatgggaaagatgacagaaagcatgtactgtg |
39994041 |
T |
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| Q |
306 |
gatcgatatgcaatttcaccacatgaagctaatgatcaagtattagggtatggcatgcatattagg |
371 |
Q |
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| T |
39994040 |
gatcgatatgcaatttcaccacatgaagctaatgatcaagtattagggtatggtatgcatattagg |
39993975 |
T |
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Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 16272333 - 16272178
Alignment:
| Q |
21 |
ttacccgagatatactatccattgagggggtcccaagcagatctgtgatcagatccaactgatggacaacactttttccaggaaaaagtggtttcccaat |
120 |
Q |
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| T |
16272333 |
ttacccgtgatatggtatccagtgagggagtaccgagcagatctgtcatcagatccaattgatggactacattttttccaggaaaaagtggttttcctgt |
16272234 |
T |
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| Q |
121 |
taatacttcggcaaagatgcaacctatactccaaatatcaattgccggagtatact |
176 |
Q |
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| T |
16272233 |
tagtacttcagcgaagatgcaacctatactccatatatcaatcgccggtgtatact |
16272178 |
T |
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