View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_high_22 (Length: 373)

Name: NF19297_high_22
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_high_22
NF19297_high_22
[»] chr4 (2 HSPs)
chr4 (148-348)||(36285979-36286179)
chr4 (16-108)||(40823903-40823995)
[»] chr7 (12 HSPs)
chr7 (19-105)||(20284848-20284934)
chr7 (19-108)||(20243512-20243601)
chr7 (19-108)||(20263906-20263995)
chr7 (19-107)||(20168155-20168243)
chr7 (19-105)||(20294565-20294651)
chr7 (31-108)||(20303594-20303671)
chr7 (19-107)||(20279416-20279504)
chr7 (19-98)||(20231457-20231536)
chr7 (19-108)||(20273711-20273800)
chr7 (16-108)||(20289156-20289248)
chr7 (31-110)||(19939009-19939088)
chr7 (31-110)||(19970148-19970227)
[»] chr8 (15 HSPs)
chr8 (67-130)||(19348300-19348363)
chr8 (67-130)||(19379366-19379429)
chr8 (67-130)||(19500631-19500694)
chr8 (65-130)||(19454361-19454426)
chr8 (65-128)||(19551618-19551681)
chr8 (65-128)||(19581007-19581070)
chr8 (65-130)||(15943112-15943177)
chr8 (65-130)||(19407341-19407406)
chr8 (67-128)||(19526650-19526711)
chr8 (67-130)||(19415420-19415483)
chr8 (65-130)||(16006438-16006503)
chr8 (65-110)||(19149273-19149318)
chr8 (65-135)||(15963795-15963865)
chr8 (65-130)||(19187197-19187262)
chr8 (79-128)||(19399065-19399114)
[»] chr2 (4 HSPs)
chr2 (34-127)||(2707396-2707489)
chr2 (34-106)||(2712642-2712714)
chr2 (19-127)||(2723773-2723881)
chr2 (19-127)||(2745603-2745711)
[»] chr6 (1 HSPs)
chr6 (79-148)||(16654243-16654312)


Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 148 - 348
Target Start/End: Complemental strand, 36286179 - 36285979
Alignment:
Q  148 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaatatctgaaccactaaagactcat 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  36286179 tctgcacaaataattcaaagaaattaagacttaaaaatgtgtaagacaaggtgagaacattatacaataaagaaaaaaatctgaaccactaaagactcat 36286080  T
Q  248 tagcatgtttcatttcctatgttactgctaaatcaccttttaagtcaactttgctgtatgcagaagtttatgagaactaaccgaagagataagaatacaa 347  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||    
T  36286079 tagcatgtttcatttcctatgttactgctaaatcaccttttaagtcaactatgctatatgcagaagtttatgagaactaaccgaagagataagaatacaa 36285980  T
Q  348 g 348  Q
    |    
T  36285979 g 36285979  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 108
Target Start/End: Original strand, 40823903 - 40823995
Alignment:
Q  16 atgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    |||||||| | ||||| |||||| |||||||| |  ||| |  || |||| |||||||| |||||||||||||| |||||||| || ||||||    
T  40823903 atgttacttgtctttagatctctgtgtataattctcaatttggaagctctatgaagataaagcaatcctcgagctattccttctatgatgtta 40823995  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 20284934 - 20284848
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatg 105  Q
    ||||| ||||| ||||||||||| ||||| | || |||| ||||||||||||||||||||||||||||||| |||||||| ||||||    
T  20284934 ttacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaagatatagcaatcctcgagctattccttcgattatg 20284848  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 20243601 - 20243512
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20243601 ttacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgtta 20243512  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 20263995 - 20263906
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    ||||| ||||| ||||||||||| ||||| | ||  ||| |||||||||||||||||||||| ||||||||||||||||| || ||||||    
T  20263995 ttacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatgtta 20263906  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 107
Target Start/End: Original strand, 20168155 - 20168243
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtt 107  Q
    ||||| ||||| ||||||||||| ||||| | || |||  |||||||||| |||||||||||||| ||||| |||||||| ||||||||    
T  20168155 ttacttgccttcaaatctctatgaataattcttagtctggaatctctgtggagatatagcaatccacgagctattccttctattatgtt 20168243  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 20294651 - 20294565
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatg 105  Q
    ||||| ||||| ||||||||||| ||||| | ||  ||| |||||| ||||||||| |||||||||||||| |||||||| ||||||    
T  20294651 ttacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagatacagcaatcctcgagctattccttctattatg 20294565  T

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Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 108
Target Start/End: Complemental strand, 20303671 - 20303594
Alignment:
Q  31 aaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    |||||||| |||||||| | || |||  |||||||||||||||| | ||||||||||||||||||||| || ||||||    
T  20303671 aaatctctgtgtataattcttagtctcgaatctctgtgaagatacaacaatcctcgagcaattccttctataatgtta 20303594  T

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Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 107
Target Start/End: Complemental strand, 20279504 - 20279416
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtt 107  Q
    ||||| ||||| |||||||| || ||||| | || |||  ||||||||||||||||||||||||| ||||| ||||||||  |||||||    
T  20279504 ttacttgccttcaaatctctgtgaataattcttagtctggaatctctgtgaagatatagcaatccgcgagctattccttctgttatgtt 20279416  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 20231536 - 20231457
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttc 98  Q
    ||||| ||||| ||| ||||||| ||||| | ||  ||| |||||||||||||||||| ||| |||||||||||||||||    
T  20231536 ttacttgccttcaaacctctatgaataattcttagcctagaatctctgtgaagatataacaaccctcgagcaattccttc 20231457  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 20273800 - 20273711
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    ||||| ||||| ||||||||||| ||||| | ||  ||  |||||||||||||||||| ||| |||||||| |||||||| || ||||||    
T  20273800 ttacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctcgagctattccttctataatgtta 20273711  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 20289248 - 20289156
Alignment:
Q  16 atgttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgtta 108  Q
    |||||||| | |||||||||||| |||||||| |  ||| |  ||||||| |||||||| |||||||||||||| ||||| || || ||||||    
T  20289248 atgttacttgtctttaaatctctgtgtataattctcaatttggaatctctatgaagataaagcaatcctcgagctattccatctataatgtta 20289156  T

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Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 19939088 - 19939009
Alignment:
Q  31 aaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 110  Q
    |||||||||||||||||   || |||  |||||||||| ||||| | |||||||||||| |||||||| |||||| ||||    
T  19939088 aaatctctatgtataatttttagtctggaatctctgtgcagatacaacaatcctcgagctattccttctattatgctaaa 19939009  T

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Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 31 - 110
Target Start/End: Complemental strand, 19970227 - 19970148
Alignment:
Q  31 aaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 110  Q
    |||||||||||||||||   || |||  |||||||||| ||||| | |||||||||||| |||||||| |||||| ||||    
T  19970227 aaatctctatgtataatttttagtctggaatctctgtgcagatacaacaatcctcgagctattccttctattatgctaaa 19970148  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19348363 - 19348300
Alignment:
Q  67 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||| ||||||||| ||||||||||||| ||||||||||||||||| |||||||||||||    
T  19348363 tgaagatagagcaatccttgagcaattccttctattatgttaaaacgcttcttccaatctagca 19348300  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19379429 - 19379366
Alignment:
Q  67 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19379429 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19379366  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 19500631 - 19500694
Alignment:
Q  67 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||| ||||||||| ||||||||||||| |||||||| |||||||| |||||||||||||    
T  19500631 tgaagatagagcaatccttgagcaattccttctattatgttgaaacgcttcttccaatctagca 19500694  T

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Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 19454426 - 19454361
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||||    
T  19454426 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctagca 19454361  T

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Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Original strand, 19551618 - 19551681
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 128  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19551618 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19551681  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 128
Target Start/End: Complemental strand, 19581070 - 19581007
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 128  Q
    |||||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19581070 tgtgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19581007  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 15943177 - 15943112
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    ||||||||||||| |||||| |||| |||||||| |||||| |||| ||||| |||||||||||||    
T  15943177 tgtgaagatatagtaatccttgagcgattccttcgattatgctaaagcgcttattccaatctagca 15943112  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 19407406 - 19407341
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||||| || |||||| ||| ||||||||| |||| ||| ||||||||||||||||||||||    
T  19407406 tgtgaagatagagtaatccttgagaaattccttctattacgttgaaacgctttttccaatctagca 19407341  T

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Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 19526650 - 19526711
Alignment:
Q  67 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 128  Q
    |||||||| || |||||| ||| ||||||||| |||||||| ||||||||||||||||||||    
T  19526650 tgaagatagagtaatccttgagaaattccttctattatgttgaaacgctttttccaatctag 19526711  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 19415483 - 19415420
Alignment:
Q  67 tgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    |||||||| || |||||| ||| ||||||||| |||||||| |||||||| |||||||||||||    
T  19415483 tgaagatagagtaatccttgagaaattccttcgattatgttgaaacgcttcttccaatctagca 19415420  T

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Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 16006503 - 16006438
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    ||||||| || || |||||| ||||||||||||| |||||| ||||||| || |||||||||||||    
T  16006503 tgtgaaggtaaagtaatccttgagcaattccttctattatgctaaaacgtttgttccaatctagca 16006438  T

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Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 19149273 - 19149318
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaa 110  Q
    ||||||||||||| |||||| ||||||||||||| |||||||||||    
T  19149273 tgtgaagatatagtaatccttgagcaattccttctattatgttaaa 19149318  T

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Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 15963795 - 15963865
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttt 135  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||| |||||||    
T  15963795 tgtgaaggtatagtagtccttgagcaattccttcgattatgctaaagcgtttgttccaatctaacattttt 15963865  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 19187262 - 19187197
Alignment:
Q  65 tgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagca 130  Q
    ||||||| ||||| | |||| ||||||||||||| |||||| |||| || || |||||||||||||    
T  19187262 tgtgaaggtatagtagtccttgagcaattccttctattatgctaaagcgtttattccaatctagca 19187197  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 128
Target Start/End: Complemental strand, 19399114 - 19399065
Alignment:
Q  79 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctag 128  Q
    |||||| ||| ||||||||| |||||||| |||||||| |||||||||||    
T  19399114 aatccttgagaaattccttctattatgttgaaacgcttcttccaatctag 19399065  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 127
Target Start/End: Original strand, 2707396 - 2707489
Alignment:
Q  34 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttttccaatcta 127  Q
    ||||||||||| || | ||||||  ||||||| |||||||| ||||  |||||||  ||||||||||||||| | ||||| |||||||||||||    
T  2707396 tctctatgtattattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatcta 2707489  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 106
Target Start/End: Original strand, 2712642 - 2712714
Alignment:
Q  34 tctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgt 106  Q
    ||||||||||| || | ||||||  ||||||  |||||||| |||||||||||||  ||||| ||||||||||    
T  2712642 tctctatgtattattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgt 2712714  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 2723773 - 2723881
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttt 118  Q
    ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||| ||||  ||||| ||||||||||  || || ||||    
T  2723773 ttactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagcgttttt 2723872  T
Q  119 tccaatcta 127  Q
     ||||||||    
T  2723873 gccaatcta 2723881  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 127
Target Start/End: Original strand, 2745603 - 2745711
Alignment:
Q  19 ttactcgcctttaaatctctatgtataatgcgtaatctataatctctgtgaagatatagcaatcctcgagcaattccttcaattatgttaaaacgctttt 118  Q
    ||||||| |||||  ||||||||||| || | ||||||  ||||||| |||||||| |||| ||| ||||  ||||| ||||||||||  || || ||||    
T  2745603 ttactcggctttaggtctctatgtattattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagcgttttt 2745702  T
Q  119 tccaatcta 127  Q
     ||||||||    
T  2745703 gccaatcta 2745711  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 148
Target Start/End: Complemental strand, 16654312 - 16654243
Alignment:
Q  79 aatcctcgagcaattccttcaattatgttaaaacgctttttccaatctagcattttttgtttatatggat 148  Q
    |||| ||||||||||||||||| ||||||||||| || || |||||||  ||| | ||||||| ||||||    
T  16654312 aatcttcgagcaattccttcaactatgttaaaacactattcccaatcttacatctgttgtttaaatggat 16654243  T

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