View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_high_24 (Length: 361)

Name: NF19297_high_24
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_high_24
NF19297_high_24
[»] chr8 (1 HSPs)
chr8 (13-345)||(16750115-16750443)
[»] chr4 (12 HSPs)
chr4 (10-188)||(7481989-7482167)
chr4 (22-188)||(7128971-7129137)
chr4 (13-188)||(7528111-7528286)
chr4 (10-188)||(7520058-7520236)
chr4 (10-110)||(7714036-7714136)
chr4 (64-188)||(7722245-7722369)
chr4 (22-188)||(7494403-7494569)
chr4 (210-270)||(7482171-7482231)
chr4 (210-266)||(7722185-7722241)
chr4 (210-251)||(7128926-7128967)
chr4 (210-251)||(7528290-7528331)
chr4 (210-270)||(7520240-7520300)


Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 13 - 345
Target Start/End: Complemental strand, 16750443 - 16750115
Alignment:
Q  13 aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750443 aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg 16750344  T
Q  113 cagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttt 212  Q
    || ||||||||| |||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16750343 ca-ttgctcaacttgtgtaca-tgataagaccgttcaacaacattttgaattgaaaaagtgggtgtgtgttgctgacgatgattctgaagtgaaaggttt 16750246  T
Q  213 tgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggatcgcaagtgcaacaagaactccgtacaaaaattgacggaaata 312  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  16750245 tgatgtagaaggtattgctgctaagatcttagaatctaagactcgtgatgagatggat--caagtgcaacaagaactccgtacaaaaattgacggaaata 16750148  T
Q  313 gatatttgctcattttagatgacatgtggaatg 345  Q
    |||||||||||||||||||||||||||||||||    
T  16750147 gatatttgctcattttagatgacatgtggaatg 16750115  T

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Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 7481989 - 7482167
Alignment:
Q  10 gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga 109  Q
    |||||||| || |||||| |||| ||||| ||||| | || | |||| ||||  ||||||||| ||||||| || |||||||||||||||||||||||||    
T  7481989 gagaagaaagagttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaaaga 7482088  T
Q  110 ccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga 188  Q
    | ||| ||||||||| ||| |||||||| |||   || ||||| |||||| | |||||||||||||| |||||| ||||    
T  7482089 ctgcacttgctcaacttgtatacaatgacaaagaagtgcaacaacattttcagttgaaaaagtgggtttgtgtttctga 7482167  T

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Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 188
Target Start/End: Complemental strand, 7129137 - 7128971
Alignment:
Q  22 ttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctc 121  Q
    |||||| |||| ||||| ||||| | || | |||| ||||  ||||||||| ||||||| || |||||||||||||||||||||||||| ||| ||||||    
T  7129137 ttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcaattatttctataattggaattggaggacttggaaagactgcacttgctc 7129038  T
Q  122 aacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga 188  Q
    ||| ||| |||||||| |||   || ||||| |||||||| |||||||| ||||| |||||| ||||    
T  7129037 aacttgtatacaatgacaaagaagtgcaacaacattttgagttgaaaaaatgggtttgtgtttctga 7128971  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 13 - 188
Target Start/End: Original strand, 7528111 - 7528286
Alignment:
Q  13 aagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccg 112  Q
    ||||| || |||||| |||| ||||| ||||||  || | |||| ||||  ||||||||||||||||| || |||||||||||||||||||||||||| |    
T  7528111 aagaaagagttgatagagttgttgtttaacactagcaacaatgtgaaagagaatgtttcagttatttctataattggaattggaggacttggaaagactg 7528210  T
Q  113 cagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga 188  Q
    || ||||||||  ||| |||||||| || |  || ||| | |||||||| || ||||| ||||| |||||| ||||    
T  7528211 cacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctga 7528286  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 7520058 - 7520236
Alignment:
Q  10 gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga 109  Q
    |||||||| || |||||| |||| ||||| ||||||  || | |||| | ||  ||||||||||||||||| || |||||||||||||||||||||||||    
T  7520058 gagaagaaagagttgatagagttgttgtttaacactagcaacaatgtgacagagaatgtttcagttatttctataattggaattggaggacttggaaaga 7520157  T
Q  110 ccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga 188  Q
    | ||| ||||||||  ||| |||||||| || |  || ||| | |||||||| || ||||| ||||| |||||| ||||    
T  7520158 ctgcacttgctcaatttgtatacaatgacaagaaagtgcaagaacattttgagtttaaaaaatgggtttgtgtttctga 7520236  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 7714136 - 7714036
Alignment:
Q  10 gagaagaaggatttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaaga 109  Q
    |||||||| || |||||| |||| ||||| ||||| | || |||||| || |  ||||||||||||||||| || |||||||| ||||||||||||||||    
T  7714136 gagaagaaagagttgatagagttgttgtttaacaccggcaacgatgtgaaggagaatgtttcagttatttctataattggaatcggaggacttggaaaga 7714037  T
Q  110 c 110  Q
    |    
T  7714036 c 7714036  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 188
Target Start/End: Complemental strand, 7722369 - 7722245
Alignment:
Q  64 aatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctcaacgtgtgtacaatgataaaaccgttcaacagcattttgaat 163  Q
    ||||||||||||||||| || ||||||||||||||||| |||||||| ||  ||||||||| ||| |||   || |||   || ||||| |||||||| |    
T  7722369 aatgtttcagttatttctataattggaattggaggactcggaaagactgcgcttgctcaacttgtatacggcgacaaagaagtgcaacaacattttgagt 7722270  T
Q  164 tgaaaaagtgggtgtgtgttgctga 188  Q
    ||||||| ||||| |||||| ||||    
T  7722269 tgaaaaaatgggtttgtgtttctga 7722245  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 188
Target Start/End: Original strand, 7494403 - 7494569
Alignment:
Q  22 ttgataaagttattgttgaacactgacatcgatgtcaaaggaaatgtttcagttatttccatcattggaattggaggacttggaaagaccgcagttgctc 121  Q
    |||||| |||| ||||| ||||| | || | |||| ||||  ||||||||||||||||| || |||||||| |||||||| || ||||| ||  ||||||    
T  7494403 ttgatagagttgttgtttaacaccggcaacaatgtgaaagagaatgtttcagttatttctataattggaatcggaggactggggaagactgcgcttgctc 7494502  T
Q  122 aacgtgtgtacaatgataaaaccgttcaacagcattttgaattgaaaaagtgggtgtgtgttgctga 188  Q
    ||  ||| |||||||| || |  ||  |||| |||||||| || ||||| ||||| |||||| ||||    
T  7494503 aatttgtatacaatgacaagaaagtgaaacaacattttgagtttaaaaaatgggtttgtgtttctga 7494569  T

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Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 7482171 - 7482231
Alignment:
Q  210 ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggat 270  Q
    |||||||||| ||||||||||  |||||||| |||||||||| |||  |||||||||||||    
T  7482171 ttttgatgtaaaaggtattgcatcaaagatcatagaatctaaaactaatgatgagatggat 7482231  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 7722241 - 7722185
Alignment:
Q  210 ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagat 266  Q
    |||||||||| ||||||||||| |||||||| |||||||||| ||| ||| ||||||    
T  7722241 ttttgatgtaaaaggtattgcttcaaagatcatagaatctaaaactagtgttgagat 7722185  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Complemental strand, 7128967 - 7128926
Alignment:
Q  210 ttttgatgtagaaggtattgctgcaaagatcttagaatctaa 251  Q
    |||||||||| |||||||||||||||| ||| ||||||||||    
T  7128967 ttttgatgtaaaaggtattgctgcaaaaatcatagaatctaa 7128926  T

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Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 7528290 - 7528331
Alignment:
Q  210 ttttgatgtagaaggtattgctgcaaagatcttagaatctaa 251  Q
    |||||||||| |||||||||||||||||||| || |||||||    
T  7528290 ttttgatgtaaaaggtattgctgcaaagatcataaaatctaa 7528331  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 7520240 - 7520300
Alignment:
Q  210 ttttgatgtagaaggtattgctgcaaagatcttagaatctaagactcgtgatgagatggat 270  Q
    |||||||||| ||||||||||||||||||||  ||||||| | |||  || ||||||||||    
T  7520240 ttttgatgtaaaaggtattgctgcaaagatcacagaatctcaaactaatgttgagatggat 7520300  T

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