View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_27 (Length: 353)
Name: NF19297_high_27
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_27 |
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| [»] scaffold0334 (1 HSPs) |
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Alignment Details
Target: scaffold0334 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: scaffold0334
Description:
Target: scaffold0334; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 2 - 353
Target Start/End: Original strand, 16247 - 16596
Alignment:
| Q |
2 |
gctttatacaaagaaatttagtgatttagaaactgattannnnnnnnncacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtga |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
16247 |
gctttatacaaagaaatttagtgatttagaaactgattattttttt--cacgttattgtaatcaaggttttcagtttccttttttattcaaagcttgtga |
16344 |
T |
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| Q |
102 |
ttatcgcataacattaactttcagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttatt |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16345 |
ttatcgcataacattaactttcagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttatt |
16444 |
T |
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| Q |
202 |
atattatatcgctgcacattattactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtccctttt |
301 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
16445 |
atattatatcgctgcacattattactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagttgctgctacgtccctttt |
16544 |
T |
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| Q |
302 |
ctttcttttatttaattaaattgaattgttgttgttggctgttccattgttg |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16545 |
ctttcttttatttaattaaattgaattgttgttgttggctgttccattgttg |
16596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 2 - 335
Target Start/End: Complemental strand, 11177720 - 11177388
Alignment:
| Q |
2 |
gctttatacaaagaaatttagtgatttagaaactgattannnnnnnnncacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtga |
101 |
Q |
| |
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||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177720 |
gctttatgcaaagaaatttagtgatttagaaactgattatttttttt-cacgttattgtaatcaaggttttcagtttcctttttcattcaaagcttgtga |
11177622 |
T |
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| Q |
102 |
ttatcgcataacattaactttcagaacctgtgttctattttcgttcagcaatccaatttcttattactttcctattcaattccaattgttattacttatt |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
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| T |
11177621 |
ttatcgcataacattaactttcagaacctgtgttctattttcgttcagcaatccaatttcttattactttcttactcaattccaattgttattacttatt |
11177522 |
T |
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| Q |
202 |
atattatatcgctgcacattattactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtccctttt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11177521 |
atattatatcgctgcacattattactcaacccgattttattttgcagcacttaccaatccaaattccctttattttcaaagctgctgctacgtccctttt |
11177422 |
T |
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| Q |
302 |
ctttcttttatttaattaaattgaattgttgttg |
335 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
11177421 |
ctttcttttatttaattaaattgaattgttgttg |
11177388 |
T |
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