View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19297_high_3 (Length: 510)
Name: NF19297_high_3
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 452; Significance: 0; HSPs: 22)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 30060972 - 30060481
Alignment:
| Q |
1 |
ggacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtt |
100 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30060972 |
ggacatcacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgcaatggattgcctcttgcagcaaaatcattgggaagtt |
30060873 |
T |
|
| Q |
101 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30060872 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggtt |
30060773 |
T |
|
| Q |
201 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30060772 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctt |
30060673 |
T |
|
| Q |
301 |
tggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30060672 |
tggatggctaatggattgatttcatctaggggtactacggaggttgaagatgttggcatcatggtgtgggatgaattgtaccaaaaatcattctttcaag |
30060573 |
T |
|
| Q |
401 |
atataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30060572 |
atagaaaaatggatgaattttctggcgacatttcattcaagatgcatgaccttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
30060481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 30750246 - 30749755
Alignment:
| Q |
1 |
ggacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30750246 |
ggacattacaaagaagagcgtgctgatctcgtggcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaagtt |
30750147 |
T |
|
| Q |
101 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
30750146 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagatagtgaactttgggatttatcagatgaaaattccattttgcctgctttgaggtt |
30750047 |
T |
|
| Q |
201 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30750046 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaaaaattgatttggctt |
30749947 |
T |
|
| Q |
301 |
tggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
30749946 |
tggatggctaatggattgatttcatctaggggtaatatggaggttgaagatgttggcatcatggtttgggatgaattgtatcaaaaatcattctttcaag |
30749847 |
T |
|
| Q |
401 |
atataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30749846 |
atagaaaaatggatgaattttctggcgacatttcattcaagattcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
30749755 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 30400677 - 30400186
Alignment:
| Q |
1 |
ggacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtt |
100 |
Q |
| |
|
|||||||| | |||||||||||| | || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
30400677 |
ggacattatagagaagagcgtgcagaacttgtagcaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtt |
30400578 |
T |
|
| Q |
101 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggtt |
200 |
Q |
| |
|
| |||| ||||||||| | ||||||||||||||| | |||||||||| ||| ||||||| |||| |||| ||||||| ||||||| | |||||||||| |
|
|
| T |
30400577 |
tgatgagctcaaggaatggagaaaaggaatggcttgatattaaagacactgagctttgggctttaccagaagaaaattatattttgcgttctttgaggtt |
30400478 |
T |
|
| Q |
201 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctt |
300 |
Q |
| |
|
|||||||||||||||| | | ||||||| |||||||||||||||||||||||||||||||| ||| |||||| | || |||||||||||| |||| |
|
|
| T |
30400477 |
gagttacttttatttaacaccgaccctaaagcaatgtttctctttttgtgctatatttcccaaggatagggaaatcttgaaagaagaattgattcagctt |
30400378 |
T |
|
| Q |
301 |
tggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaag |
400 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30400377 |
tggatggctaatggattgatttcatcttggggtaatacggaggttgaagatgttggcatcatggtttgggatgaattgtaccaaaaatcattctttcaag |
30400278 |
T |
|
| Q |
401 |
atataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||| |
|
|
| T |
30400277 |
acaaaaaaatggatgaattttctggcaacatttcattcaagatgcatgatcttgtccatgatctcgctaagtcagtaatggggcaagaatgt |
30400186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 255; E-Value: 1e-141
Query Start/End: Original strand, 31 - 493
Target Start/End: Complemental strand, 29853884 - 29853422
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
|||| |||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || |||||||||| |
|
|
| T |
29853884 |
gtggaaataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaaaacattgggaggtttgatgagctcaaggaatgaagaaaaggaat |
29853785 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
||||| | |||||||||||||| ||||||| |||| || | ||||||| ||||||| |||||||||||||||||||||||||||| | || ||||||| |
|
|
| T |
29853784 |
ggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcttgctttgaggttgagttacttttatttaacaccaaccctaaa |
29853685 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| |||| ||||||||| || |||||||||||| |||||||||||||||||||| |||||||||| | |
|
|
| T |
29853684 |
acaatgtttctccttttgcgctatatttcccaaggatggagaaatcctgaaagaagaattgattcaactttggatggctaatggatttatttcatctaag |
29853585 |
T |
|
| Q |
331 |
ggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgaca |
430 |
Q |
| |
|
|||||| ||| ||||||||||| || | ||||||||| | |||||||||||||| ||||||||||||||||| || |||||||||| ||||| |||| |
|
|
| T |
29853584 |
ggtaatttggacgttgaagatgttggaaatatggtttggaaggaattgtaccaaaagtcattctttcaagatatcaagatggatgaatactctggagaca |
29853485 |
T |
|
| Q |
431 |
tttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtg |
493 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29853484 |
tttttttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaatgtg |
29853422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 31 - 492
Target Start/End: Complemental strand, 30436389 - 30435928
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||||| || |||||||||| |
|
|
| T |
30436389 |
gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaaggaat |
30436290 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
||||| | |||||||||||||| ||||||| |||| || | ||||||| |||||||| |||||||| |||||||||||||||||| | || ||||||| |
|
|
| T |
30436289 |
ggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcccgctttgagattgagttacttttatttaacaccaaccctaaa |
30436190 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||||| ||| |||||||||| | |
|
|
| T |
30436189 |
gcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaatgaatttatttcatctatg |
30436090 |
T |
|
| Q |
331 |
ggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgaca |
430 |
Q |
| |
|
|||||| ||| ||||||||||| || | ||||||||| | ||||||||||||||||||||||||||||||| || |||||||||| || ||| |||| |
|
|
| T |
30436089 |
ggtaatttggacgttgaagatgttggaaaaatggtttggaaggaattgtaccaaaaatcattctttcaagatagcaagatggatgaatattttggagaca |
30435990 |
T |
|
| Q |
431 |
tttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
30435989 |
tttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaagaatgt |
30435928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 36 - 492
Target Start/End: Complemental strand, 29872742 - 29872286
Alignment:
| Q |
36 |
aataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt |
135 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||| || ||||||||||||||| |
|
|
| T |
29872742 |
aataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggtttgatgagctcaaggaatgaagaaaaggaatggctt |
29872643 |
T |
|
| Q |
136 |
aaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat |
235 |
Q |
| |
|
| ||||| |||||||| ||||||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||||| | || ||||||| |||| |
|
|
| T |
29872642 |
gatattaaggacagtgagctttgggctttatcgcaagaaaattctattttgcttgctttgaggttgagttacttttatttaacaccaaccctaaagcaat |
29872543 |
T |
|
| Q |
236 |
gtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggtaa |
335 |
Q |
| |
|
||||||||||||| |||||||||||||| ||| | ||||||| || |||||||||||| |||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
29872542 |
gtttctctttttgcgctatatttcccaaggatagaaaaatcctgaaagaagaattgattcaactttggatggctaatgaatttatttcatctatgggtaa |
29872443 |
T |
|
| Q |
336 |
tacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacatttca |
435 |
Q |
| |
|
| ||| ||||||||||| || | |||||||||| | |||||||||||||||||||||||||||||| || |||||||||| |||||| |||||||| |
|
|
| T |
29872442 |
tttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaagatggcaagatggatgaatattctggagacatttct |
29872343 |
T |
|
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
29872342 |
ttcaagatgcatgatcttgtccatgatctcgctcaatcaataatggggcaagaatgt |
29872286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 31 - 493
Target Start/End: Original strand, 30712958 - 30713420
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
|||| |||||||||||| |||| ||||||||||||||||||||| |||||||||||| ||||||| |||| |||| ||||||||| || ||||| |||| |
|
|
| T |
30712958 |
gtggaaataggaaaggagatagcaaagaaatgtaatggattgccacttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagaaaatgaat |
30713057 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
||||| | |||||||||||||| ||||||| |||| || | ||||||| |||||||||||||||||| ||||||||||||||||| | || ||||||| |
|
|
| T |
30713058 |
ggcttgatattaaagacagtgagctttgggctttaccacaagaaaattctattttgcctgctttgaggctgagttacttttatttatcaccaaccctaaa |
30713157 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| | |||||||||||||||||||| |||||||||| | |
|
|
| T |
30713158 |
gcaatgtttctctttttgtgctatatttcccaaggatagagaaatcctaaaagaagaattgattcgactttggatggctaatggatttatttcatctatg |
30713257 |
T |
|
| Q |
331 |
ggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgaca |
430 |
Q |
| |
|
|||||| ||| ||||||||||| || | |||||||||| | ||||||||||||||||||||||| |||||| || |||||||||| |||||| ||| |
|
|
| T |
30713258 |
ggtaatttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattcttccaagattgcaagatggatgaatattctggaaaca |
30713357 |
T |
|
| Q |
431 |
tttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtg |
493 |
Q |
| |
|
|||| || || ||||||||||||||||||||||| ||||||||||||| |||| ||||||||| |
|
|
| T |
30713358 |
tttcttttaaaatgcatgatcttgtccatgatctcgctcaatcagtaacggggaaagaatgtg |
30713420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 40 - 492
Target Start/End: Complemental strand, 30483965 - 30483516
Alignment:
| Q |
40 |
ggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggcttaaaa |
139 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||| || ||||||||||||||| | | |
|
|
| T |
30483965 |
ggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaatggcttgata |
30483866 |
T |
|
| Q |
140 |
ttaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaatgttt |
239 |
Q |
| |
|
||||||||||||| |||||||||||| || ||||||| | ||||| |||||||||||||||||||||||||||||| | || ||||||| |||||||| |
|
|
| T |
30483865 |
ttaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgaggttgagttacttttatttaacaccaaccctaaagcaatgttt |
30483766 |
T |
|
| Q |
240 |
ctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggtaatacg |
339 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||||| ||| || | | | ||| |
|
|
| T |
30483765 |
ctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcagctttggatggctaatggatttattgca---aagaggaattta |
30483669 |
T |
|
| Q |
340 |
gaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacatttcattca |
439 |
Q |
| |
|
|||||||||||||| || | |||||||||| | ||||||||| |||||| ||||||||||||| || |||||||||| |||||| |||||||| |||| |
|
|
| T |
30483668 |
gaggttgaagatgttggaaacatggtttggaaggaattgtacagaaaatcgttctttcaagatagcaagatggatgaatattctggagacatttctttca |
30483569 |
T |
|
| Q |
440 |
agatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30483568 |
agatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaatgt |
30483516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 31 - 492
Target Start/End: Original strand, 30338058 - 30338516
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| ||| || |||||||||| |
|
|
| T |
30338058 |
gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttaatggtctcaatgaatgaagaaaaggaat |
30338157 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
||||| | |||||||||||||| |||||||||||| || ||||||| | ||||| ||||||||||| |||||||||||||||||| | || ||||||| |
|
|
| T |
30338158 |
ggcttgatattaaagacagtgagctttgggatttaccacatgaaaaatctattttacctgctttgagtttgagttacttttatttaacaccaaccctaaa |
30338257 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||| ||| || | | |
|
|
| T |
30338258 |
gcaatgtttctccttttgtgctatatttcccaaagatagagaaatcctgaaggaagaattgattcaactttggatggctaatggatttattgca---aag |
30338354 |
T |
|
| Q |
331 |
ggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgaca |
430 |
Q |
| |
|
| ||| |||||||||||||| || | |||||||||| | ||||||||| ||||||| ||||||||||||| || |||||||||| |||||| |||| |
|
|
| T |
30338355 |
aggaatttagaggttgaagatgttggaaacatggtttggaaggaattgtacaaaaaatcgttctttcaagatagcaagatggatgaatattctggagaca |
30338454 |
T |
|
| Q |
431 |
tttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30338455 |
tttctttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggcaagaatgt |
30338516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 12 - 492
Target Start/End: Complemental strand, 30207114 - 30206634
Alignment:
| Q |
12 |
agaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactca |
111 |
Q |
| |
|
|||||||||||| | || |||| |||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||| || |||||| ||| |
|
|
| T |
30207114 |
agaagagcgtgcagagcttgtggaaataggaaaggagatagtaaagaaatgtgatggattgcctcttgcagcacaagcattgggaggtctaatgagttca |
30207015 |
T |
|
| Q |
112 |
aggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttactttt |
211 |
Q |
| |
|
||||| || ||||| ||||||||| |||||||||| ||||||||||||| |||| || |||| |||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
30207014 |
aggaatgaagaaaaagaatggcttgaaattaaagagagtgaactttgggctttaccacatgagaattatattttacctgctttgaggttgagctactttc |
30206915 |
T |
|
| Q |
212 |
atttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaa |
311 |
Q |
| |
|
||||| | || || |||| | |||||| ||||||||||||| |||||||||||| ||||| || | | ||||||||||||| |||||||||||||| |
|
|
| T |
30206914 |
atttaactccaaccttaaagcggtgtttcgctttttgtgctatgtttcccaaagatacagaattcgtgagggaagaattgattcatctttggatggctaa |
30206815 |
T |
|
| Q |
312 |
tggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatg |
411 |
Q |
| |
|
|| ||| |||| |||||||| |||| ||||||||||||||| |||| |||||||||| ||||||||| ||||||||| ||||||||||| || || ||| |
|
|
| T |
30206814 |
tgaatttattttatctagggaaaatatggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatctttctttcaagacatcaagatg |
30206715 |
T |
|
| Q |
412 |
gatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|| | |||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
30206714 |
gacaacggttctggagacatttctttcaagatgcatgatcttgtccatgatcttgctcaatcagtaatgggtcaagaatgt |
30206634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 36 - 492
Target Start/End: Original strand, 30241919 - 30242366
Alignment:
| Q |
36 |
aataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggctt |
135 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||| ||||||||| || ||| ||||||||||| |
|
|
| T |
30241919 |
aataggaaaggagattgtaaagaaatgtaatggattgcctcttgcagcgaaagcattgggaggtttaatgagctcaaggaatgaagaagaggaatggctt |
30242018 |
T |
|
| Q |
136 |
aaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaat |
235 |
Q |
| |
|
|||||||||| || || ||||||| || || | |||| ||||||||||||||||||||||||||||||||||| | || | |||||||||| |
|
|
| T |
30242019 |
gaaattaaagatagcgagctttgggccttgccacaagaaa------ttttgcctgctttgaggttgagttacttttatttaacaccaactctaaaacaat |
30242112 |
T |
|
| Q |
236 |
gtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggtaa |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||| || |||||||||||||| ||| || || || || |
|
|
| T |
30242113 |
gtttctctttttgtgctatatttcccaaagatggagaaatcctgaaggaagaattgattcagctctgaatggctaatggatttattgcaa--agaggaaa |
30242210 |
T |
|
| Q |
336 |
tacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacatttca |
435 |
Q |
| |
|
| | ||||||||||||| || | |||||||||| | |||||||||||||||||||| |||||||| | ||||||||||||| |||||| |||||||| |
|
|
| T |
30242211 |
ttag-aggttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattttttcaagacagcaaaatggatgaatattctggagacatttct |
30242309 |
T |
|
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
30242310 |
ttcaagatgcatgatcttgtccatgatctcgctcaatcagtaatggggccagaatgt |
30242366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 308 - 492
Target Start/End: Original strand, 30676978 - 30677162
Alignment:
| Q |
308 |
ctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaa |
407 |
Q |
| |
|
|||||||||| |||||||||| ||||||| ||| ||||| ||||| || | || ||||||| | ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
30676978 |
ctaatggatttatttcatctatgggtaatttggacgttgatgatgttggaaacacggtttggaaggaattgtaccaaaaatcattctttcaagatagaaa |
30677077 |
T |
|
| Q |
408 |
aatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|||||||||| |||||| |||||||| || |||||||||||||||||||||||||| ||||||| ||||||||||| ||||||| |
|
|
| T |
30677078 |
gatggatgaatattctggagacatttcttttaagatgcatgatcttgtccatgatctcgctcaattagtaatggggccagaatgt |
30677162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 122 - 493
Target Start/End: Complemental strand, 17983389 - 17983018
Alignment:
| Q |
122 |
aaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggc |
221 |
Q |
| |
|
||||||||||| || |||||||||| || || || |||| |||| | |||| |||| ||||| || ||| | |||||||| |||||| ||||| | | |
|
|
| T |
17983389 |
aaaaggaatggtttgaaattaaagagagcgagctctgggctttaccgcatgagaattctattttcccagctctaaggttgagctactttcatttatcacc |
17983290 |
T |
|
| Q |
222 |
agccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatt |
321 |
Q |
| |
|
| || |||||||||||||| ||||||||||||||||||||||||| ||||||||| | || |||||| | ||| ||||||||||||||| ||| || |
|
|
| T |
17983289 |
aaccttaaaacaatgtttcgctttttgtgctatatttcccaaagaagcagaaatcatgaaagaagaactaattcatctttggatggctaataaatttatc |
17983190 |
T |
|
| Q |
322 |
tcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaatttt |
421 |
Q |
| |
|
|||||||| ||| ||||||||||||||| |||| |||| ||||| ||||||||||||||||||| ||||||||||| || | || ||||| | || |
|
|
| T |
17983189 |
tcatctagaaaaaatttggaggttgaagatgttggcaacatgatttggaatgaattgtaccaaaaatctttctttcaagacatccatattgatgattatt |
17983090 |
T |
|
| Q |
422 |
ctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgtg |
493 |
Q |
| |
|
| | | ||||| ||||| ||||| ||||| |||||||||||||||||||||||| |||||| ||||||| |
|
|
| T |
17983089 |
caagtgtgatttctttcaaaatgcacgatctcgtccatgatcttgctcaatcagtagcggggcatgaatgtg |
17983018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 34 - 483
Target Start/End: Complemental strand, 30475945 - 30475496
Alignment:
| Q |
34 |
gcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggc |
133 |
Q |
| |
|
|||||||| |||| ||||||||||| ||| |||||||||||||||||| || |||||||| || ||||| |||||||| |||||||| ||||||| |
|
|
| T |
30475945 |
gcaataggtaaggcgatagtaaagaagtgtggaggattgcctcttgcagcacaagcattgggaggtctaatgcgctcaaggagtgatgaaaatgaatggc |
30475846 |
T |
|
| Q |
134 |
ttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaaca |
233 |
Q |
| |
|
|| |||||||||||||| | || ||| ||| || |||| |||| ||||||||| || |||||||| || |||||| ||||| | | || |||| | |
|
|
| T |
30475845 |
ttgaaattaaagacagtaatctctggaccttaccatatgagaattccattttgccagccttgaggttaagctactttcatttaacaccgaccttaaagcg |
30475746 |
T |
|
| Q |
234 |
atgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggt |
333 |
Q |
| |
|
||||| |||||||||| ||||||||||||||| ||||| |||||||||| |||||| || ||||||| |||||||| |||| || | || | |
|
|
| T |
30475745 |
gtgttttgctttttgtgcgatatttcccaaagatatggaaattgtaaaggaagatttgattcatctatggatgggcaatggatttattttctcaaaggct |
30475646 |
T |
|
| Q |
334 |
aatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacattt |
433 |
Q |
| |
|
||| ||| || ||| | | |||| ||| ||||| | ||| ||| ||||||||||||||| ||||| || || || ||||| | ||| || |||||| |
|
|
| T |
30475645 |
aatttggatgtagaattttttggcaatatgatttggaaggaactgtgccaaaaatcattcttccaagacatcaagatagatgattattcaggagacatta |
30475546 |
T |
|
| Q |
434 |
cattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatgggg |
483 |
Q |
| |
|
| |||||||||||||| || || |||||||||||||||||||| |||||| |
|
|
| T |
30475545 |
ctttcaagatgcatgacctagtgcatgatcttgctcaatcagttatgggg |
30475496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 35 - 474
Target Start/End: Original strand, 30521162 - 30521601
Alignment:
| Q |
35 |
caataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggct |
134 |
Q |
| |
|
|||||||||| || ||||||||||| ||| |||||||||||||||||| || |||||||| | ||||| |||||||| | ||||| |||||||| |
|
|
| T |
30521162 |
caataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggct |
30521261 |
T |
|
| Q |
135 |
taaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaa |
234 |
Q |
| |
|
| |||||||||| || ||||| |||| | |||| |||| |||||||||||||| |||||||| |||||| ||||| || || |||||||| |
|
|
| T |
30521262 |
tgaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaaccttaaaacaa |
30521361 |
T |
|
| Q |
235 |
tgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggta |
334 |
Q |
| |
|
|||||| |||||||||| || |||||||||||| ||||||| | |||| ||| || ||| || ||||| || || ||||| || ||||| |||| | |
|
|
| T |
30521362 |
tgtttcactttttgtgccatgtttcccaaagatatagaaatcatgaagggagatttaattcatctctggatcgccaacggatttatatcatcaagggaaa |
30521461 |
T |
|
| Q |
335 |
atacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacatttc |
434 |
Q |
| |
|
|| ||||| |||||||| || | ||| ||||| ||||||||| |||||| ||||| || ||||| || || |||| || ||| || | |||||| |
|
|
| T |
30521462 |
atttagaggtagaagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatgattcaggaggcatttc |
30521561 |
T |
|
| Q |
435 |
attcaagatgcatgatcttgtccatgatcttgctcaatca |
474 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30521562 |
tttcaagttgcatgatcttgtccatgatcttgctcaatca |
30521601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 35 - 474
Target Start/End: Original strand, 30561502 - 30561941
Alignment:
| Q |
35 |
caataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatggct |
134 |
Q |
| |
|
|||||||||| || ||||||||||| ||| |||||||||||||||||| || |||||||| | ||||| |||||||| | ||||| |||||||| |
|
|
| T |
30561502 |
caataggaaaagagatagtaaagaagtgtgggggattgcctcttgcagcacaagcattgggaggcctaatgtgctcaaggagtggagaaaaagaatggct |
30561601 |
T |
|
| Q |
135 |
taaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaacaa |
234 |
Q |
| |
|
| |||||||||| || ||||| |||| | |||| |||| |||||||||||||| |||||||| |||||| ||||| || || |||||||| |
|
|
| T |
30561602 |
tgaaattaaagatagcaggatttggtctttaccgaatgagaattctattttgcctgctttaaggttgagctactttcatttaaacccaaccttaaaacaa |
30561701 |
T |
|
| Q |
235 |
tgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggggta |
334 |
Q |
| |
|
|||||| |||||||||| || |||||||||||| ||||||| | |||| ||| || ||| || ||||| || || ||||| || ||||| |||| | |
|
|
| T |
30561702 |
tgtttcactttttgtgccatgtttcccaaagatatagaaatcatgaagggagatttaattcatctctggatcgccaacggatttatatcatcaagggaaa |
30561801 |
T |
|
| Q |
335 |
atacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgacatttc |
434 |
Q |
| |
|
|| ||||| |||||||| || | ||| ||||| ||||||||| |||||| ||||| || ||||| || || |||| || ||| || | |||||| |
|
|
| T |
30561802 |
atttagaggtagaagatgttggaaatatgatttggaatgaattgtgccaaaagtcatttttccaagaaatcaagatggtcgatgattcaggaggcatttc |
30561901 |
T |
|
| Q |
435 |
attcaagatgcatgatcttgtccatgatcttgctcaatca |
474 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30561902 |
tttcaagttgcatgatcttgtccatgatcttgctcaatca |
30561941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 31 - 165
Target Start/End: Original strand, 30676821 - 30676955
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
|||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| ||||||||| || || ||||||| |
|
|
| T |
30676821 |
gtggaaattggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattggggggtttgatgagctcaaggaatgaagagaaggaat |
30676920 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggattta |
165 |
Q |
| |
|
||||| | |||||||||||||| ||||||| |||| |
|
|
| T |
30676921 |
ggcttgatattaaagacagtgagctttgggcttta |
30676955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 303 - 474
Target Start/End: Original strand, 30330936 - 30331107
Alignment:
| Q |
303 |
gatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagat |
402 |
Q |
| |
|
||||||| ||||||| |||||||||||| ||||| |||||| |||||| | | ||||| |||| ||| ||||| ||||||| |||||||| |||| |
|
|
| T |
30330936 |
gatggctgatggatttatttcatctaggcgtaatttggaggtcctagatgttgctagcatggcttggaatggattgtgccaaaaaccattctttgaagac |
30331035 |
T |
|
| Q |
403 |
ataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatca |
474 |
Q |
| |
|
|| || || |||||| |||| |||||||| || |||| || ||||||| || ||||||||||||||||| |
|
|
| T |
30331036 |
atcaagatctatgaatattctaaagacatttctttaaagacgcgtgatcttttcaatgatcttgctcaatca |
30331107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 15347102 - 15347065
Alignment:
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaatc |
473 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||| |
|
|
| T |
15347102 |
ttcacgatgcatgatcttgttcatgatcttgctcaatc |
15347065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 435 - 468
Target Start/End: Complemental strand, 16396770 - 16396737
Alignment:
| Q |
435 |
attcaagatgcatgatcttgtccatgatcttgct |
468 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
16396770 |
attcaagatgcatgatcttgttcatgatcttgct |
16396737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 17927692 - 17927655
Alignment:
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaatc |
473 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
17927692 |
ttcaaaatgcatgatcttgttcatgatcttgctcaatc |
17927655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 436 - 472
Target Start/End: Complemental strand, 15335732 - 15335696
Alignment:
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaat |
472 |
Q |
| |
|
||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
15335732 |
ttcaaaatgcatgatcttgttcatgatcttgctcaat |
15335696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 491
Target Start/End: Complemental strand, 26707934 - 26707448
Alignment:
| Q |
2 |
gacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagttt |
101 |
Q |
| |
|
||||||||| |||||||| | | || || |||| |||||||||||| |||||||| |||||||||||||| ||||||||||||||| |||||||| |||| |
|
|
| T |
26707934 |
gacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaaaaaatgtaatggattacctcttgcagcaaaagcattgggaggttt |
26707835 |
T |
|
| Q |
102 |
aatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttg |
201 |
Q |
| |
|
|||| ||||| ||| || ||||||||||||||| | |||||||||||||| |||||||||||| || | ||||| | ||||||||||||||||||||| |
|
|
| T |
26707834 |
aatgttctcaatgaatgaagaaaaggaatggcttgatattaaagacagtgagctttgggatttaccacaagaaaaatctattttgcctgctttgaggttg |
26707735 |
T |
|
| Q |
202 |
agttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggcttt |
301 |
Q |
| |
|
||||||||||||||| | || ||||||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |||| |
|
|
| T |
26707734 |
agttacttttatttaacaccaaccctaaagcaatgtttctctttttgtgctatatttcccaaagatagagaaatcttgaaggaagaattgattcaacttt |
26707635 |
T |
|
| Q |
302 |
ggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaaga |
401 |
Q |
| |
|
|||||||||||||||| ||| || | | | ||| |||||||||||||| || | |||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
26707634 |
ggatggctaatggatttattgca---aagaggaatttagaggttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaaga |
26707538 |
T |
|
| Q |
402 |
tataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatg |
491 |
Q |
| |
|
|| |||| ||||| |||||| |||||||| |||||||||||||||||| |||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
26707537 |
ctgtaagatgggtgaatattctggagacatttctttcaagatgcatgatcttatccatgatctcgctcaatcagtaatgggacaagaatg |
26707448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 2 - 492
Target Start/End: Original strand, 20296086 - 20296576
Alignment:
| Q |
2 |
gacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagttt |
101 |
Q |
| |
|
||||||||| |||||||| | | || || |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
20296086 |
gacattacagagaagagcatacaaagcttgtggaaataggaaaggagatagtaaagaaatgtaatggattgcctcttgcagcaaaagcattgggaggttt |
20296185 |
T |
|
| Q |
102 |
aatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttg |
201 |
Q |
| |
|
|||| ||||| ||| || ||||||||||||| | | |||||||||| ||| ||||||| |||| || | ||||| | |||||||||||||||||| || |
|
|
| T |
20296186 |
aatggtctcaatgaatgaagaaaaggaatggcgtgatattaaagacaatgacctttgggctttaccacaagaaaaatctattttgcctgctttgaggctg |
20296285 |
T |
|
| Q |
202 |
agttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggcttt |
301 |
Q |
| |
|
||||||||||||||| | || | ||||| ||||||||||||||||||||||||||||| || ||| ||||||| | || |||||||||||| ||||| |
|
|
| T |
20296286 |
agttacttttatttaacaccaactctaaagcaatgtttctctttttgtgctatatttcctaaggatagagaaatcttgaaagaagaattgattcagcttt |
20296385 |
T |
|
| Q |
302 |
ggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaaga |
401 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||| ||| ||||||||||| || | |||||||||| | ||||||||||||||||||||||||||||| |
|
|
| T |
20296386 |
ggatggctaatggattaatttcatctatgggtaatttggacgttgaagatgttggaaacatggtttggaaggaattgtaccaaaaatcattctttcaaga |
20296485 |
T |
|
| Q |
402 |
tataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|| ||||| ||||||| |||| | || |||| |||||||||||||||||||| ||||||| ||| |||||| ||||| |||||||| |
|
|
| T |
20296486 |
aatcaaaatagatgaatattctagagatatttatttcaagatgcatgatcttgtttatgatctccttcattcagtagtggggaaagaatgt |
20296576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 31 - 474
Target Start/End: Complemental strand, 52352532 - 52352088
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
||||||||||| || | ||||||||||| ||| |||||||||||||| ||| || |||| ||| || ||||| |||||| || | |||||||||| |
|
|
| T |
52352532 |
gtggcaataggcaaagcgatagtaaagaagtgtgggggattgcctcttgctgcacaagcattaggaggtctaatgcgctcaagaaatggagaaaaggaat |
52352433 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
|| || |||||||||| || | |||||| |||||||||||| |||| ||||||||||| |||||||||||||| || ||||| || || || |||| |
|
|
| T |
52352432 |
gggttgaaattaaagagagcaagctttggtctttatcagatgagaattctattttgcctgccttgaggttgagttatttccatttaacgtcaaccttaaa |
52352333 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
||||||||||||||| ||||| ||||||||||||||| | ||||||||||| || || |||||| || |||||||| |||||||| ||||| |||| | |
|
|
| T |
52352332 |
acaatgtttctctttctgtgccatatttcccaaagatacggaaatcctaaaagacgatttgattcatctctggatggccaatggatttatttcgtctaag |
52352233 |
T |
|
| Q |
331 |
ggtaatacggaggttg-aagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgac |
429 |
Q |
| |
|
| ||| |||||| | |||| || |||| ||| ||||| |||||||||||||||| |||||||||||||| || || || |||| | || || ||| |
|
|
| T |
52352232 |
gaaaatttggaggtagaaagaagttggcaatatgatttggaatgaattgtaccaaaagtcattctttcaagacatcaagatcaatgattatttaggagac |
52352133 |
T |
|
| Q |
430 |
atttcattcaagatgcatgatcttgtccatgatcttgctcaatca |
474 |
Q |
| |
|
||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52352132 |
atttctttcaagatgcatgatcttgtacatgatcttgctcaatca |
52352088 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 32 - 401
Target Start/End: Complemental strand, 13617168 - 13616800
Alignment:
| Q |
32 |
tggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaatg |
131 |
Q |
| |
|
|||||||||||||||| ||||| || || ||| |||||||||||||||| | || ||||||| | |||| |||| |||| | ||||||||||| |
|
|
| T |
13617168 |
tggcaataggaaaggagatagttaaaaagtgtggaggattgcctcttgcaggacaagcattggggtctctaatacactcgaggagtggagaaaaggaatg |
13617069 |
T |
|
| Q |
132 |
gcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaaa |
231 |
Q |
| |
|
| | |||||| ||| || || |||||||||||| |||| |||| ||||| |||| ||||||| |||||||||| ||||| || || || | ||| |
|
|
| T |
13617068 |
gtgtgaaattagagagagcgagctttgggatttacggtatgagaattctatttttcctgatttgaggctgagttacttc-atttatcgccaacctttaaa |
13616970 |
T |
|
| Q |
232 |
caatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctaggg |
331 |
Q |
| |
|
||||| ||| |||| |||| | ||||||| |||||| || ||||| |||||||||||||||| |||||||||||||||| ||| ||||||| || |
|
|
| T |
13616969 |
caatgattcgctttctgtgttgtatttcctaaagatacaaaaatcacaaaggaagaattgattcatctttggatggctaatgaatttatttcatgtaaaa |
13616870 |
T |
|
| Q |
332 |
gtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaaga |
401 |
Q |
| |
|
|| ||||||||||||||| || | |||| ||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
13616869 |
aaaaattggaggttgaagatgttggaaacatgatttggaatgaattgtaccaaaaatctttttttcaaga |
13616800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 31 - 492
Target Start/End: Original strand, 7581252 - 7581713
Alignment:
| Q |
31 |
gtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtttaatgaactcaaggaaagatgaaaaggaat |
130 |
Q |
| |
|
||||||||||| ||||| |||||||| |||||| |||||||||||||||||| || ||||||| || ||||| ||||||||| || |||||||||| |
|
|
| T |
7581252 |
gtggcaataggcaaggagatagtaaaaaaatgtgcgggattgcctcttgcagcacaagcattggggtgtctaatgcactcaaggagtgaagaaaaggaat |
7581351 |
T |
|
| Q |
131 |
ggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggttgagttacttttatttaccggcagccctaaa |
230 |
Q |
| |
|
|| || |||||||||| || || |||||||||||| | |||| |||| | |||||| ||| |||| ||||| |||||| ||||| | || || |||| |
|
|
| T |
7581352 |
ggtttgaaattaaagagagcgagctttgggatttaccgcatgagaattctactttgccagctctgagattgagctactttcatttatcaccaaccttaaa |
7581451 |
T |
|
| Q |
231 |
acaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctttggatggctaatggattgatttcatctagg |
330 |
Q |
| |
|
|||||||||| ||||||||||||||||||| |||||| || ||||| | ||||||||||||||| |||||||||||||||| ||| ||||||||||| |
|
|
| T |
7581452 |
acaatgtttcgctttttgtgctatatttcctaaagatacaaaaatcatgaaggaagaattgattcatctttggatggctaatgaatttatttcatctaga |
7581551 |
T |
|
| Q |
331 |
ggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaagatataaaaatggatgaattttctggcgaca |
430 |
Q |
| |
|
||| ||||||||||||||| |||| |||| ||||| ||||||||| |||||| || ||||||||||| || | |||||||| ||| | |||| |
|
|
| T |
7581552 |
aaaaatttggaggttgaagatgttggcaacatgatttggaatgaattgtgccaaaagtctttctttcaagacattcatatggatgatgattcaagagaca |
7581651 |
T |
|
| Q |
431 |
tttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
7581652 |
tttctttcaaaatgcatgatctcatccatgatcttgctcgatcagtagtggtgcaagaatgt |
7581713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 7100024 - 7099533
Alignment:
| Q |
1 |
ggacattacaaagaagagcgtgctaatctcgtggcaataggaaaggaaatagtaaagaaatgtaatggattgcctcttgcagcaaaatcattgggaagtt |
100 |
Q |
| |
|
|||||||||| ||||||||||||| | || ||| |||||| ||||| |||||||| || ||| |||||||||||||||||| || |||| || || |
|
|
| T |
7100024 |
ggacattacagagaagagcgtgctgagcttgtgaaaataggcaaggagatagtaaaaaagtgtggaggattgcctcttgcagcacaagcattagggtgtc |
7099925 |
T |
|
| Q |
101 |
taatgaactcaaggaaagatgaaaaggaatggcttaaaattaaagacagtgaactttgggatttatcagatgaaaatttcattttgcctgctttgaggtt |
200 |
Q |
| |
|
||||| | ||||| | || ||||| | |||| | |||||||||| ||||| | |||| |||| | | || |||| |||||||| ||||||||||| |
|
|
| T |
7099924 |
taatgcattcaagaagtgaagaaaaagcatggttagaaattaaagagagtgagatctgggctttaccgcacgagaattctattttgccagctttgaggtt |
7099825 |
T |
|
| Q |
201 |
gagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttggctt |
300 |
Q |
| |
|
||| ||||| ||||| | || || |||||||||||||| |||||||||||||||||| ||||||| || ||||| | ||||||||||||||| ||| |
|
|
| T |
7099824 |
gagctacttccatttatcaccaaccttaaaacaatgtttcgctttttgtgctatatttcgcaaagatacaaaaatcatgaaggaagaattgattcatctt |
7099725 |
T |
|
| Q |
301 |
tggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattctttcaag |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||| || | |||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
7099724 |
tggatggctaatggatttatttcatctagaaaaaatttggaggttgaagatgttggaaacatgatttggaatgaattgtaccaaaaatctttctttcaag |
7099625 |
T |
|
| Q |
401 |
atataaaaatggatgaattttctggcgacatttcattcaagatgcatgatcttgtccatgatcttgctcaatcagtaatggggcaagaatgt |
492 |
Q |
| |
|
| || | |||||||| | ||| | | ||||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7099624 |
acatccatatggatgattattcaagagtgatttctttcaaaatgcatgatctcgtccatgatcttgctcaatcagtaggggggcaagaatgt |
7099533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 197 - 402
Target Start/End: Original strand, 25293623 - 25293828
Alignment:
| Q |
197 |
ggttgagttacttttatttaccggcagccctaaaacaatgtttctctttttgtgctatatttcccaaagatgcagaaatcctaaaggaagaattgatttg |
296 |
Q |
| |
|
||||||| |||||||||||| | | || |||| | |||||| ||||||||||||| ||||| |||||| || ||||| ||||||||||||| | |
|
|
| T |
25293623 |
ggttgagctacttttatttaactccgaccttaaagcgatgttttgctttttgtgctatgtttccaaaagatacaaaaatcgataaggaagaattgactca |
25293722 |
T |
|
| Q |
297 |
gctttggatggctaatggattgatttcatctaggggtaatacggaggttgaagatgtcggcatcatggtttgggatgaattgtaccaaaaatcattcttt |
396 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||| ||||||||||||||| |||| |||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
25293723 |
tctttggatggctaatggatttatttcatctagggaaaatttggaggttgaagatgttggcagcatggtttggaatgaattgtgccaaaaatcattcttt |
25293822 |
T |
|
| Q |
397 |
caagat |
402 |
Q |
| |
|
|||||| |
|
|
| T |
25293823 |
caagat |
25293828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 436 - 473
Target Start/End: Complemental strand, 8187202 - 8187165
Alignment:
| Q |
436 |
ttcaagatgcatgatcttgtccatgatcttgctcaatc |
473 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
8187202 |
ttcaagatgcatgatcttgtacatgatcttgctcaatc |
8187165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 446 - 474
Target Start/End: Original strand, 25293834 - 25293862
Alignment:
| Q |
446 |
atgatcttgtccatgatcttgctcaatca |
474 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25293834 |
atgatcttgtccatgatcttgctcaatca |
25293862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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