View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_32 (Length: 328)
Name: NF19297_high_32
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_32 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 32 - 325
Target Start/End: Complemental strand, 3014064 - 3013771
Alignment:
| Q |
32 |
tgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggtttccga |
131 |
Q |
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| T |
3014064 |
tgctgaaaaatggggagaactgttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggtttccga |
3013965 |
T |
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| Q |
132 |
ttactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaaaattcaaaca |
231 |
Q |
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| T |
3013964 |
ttactcggtggcttaacagtatcacctggaaaatcaaagcaaaacaaaaacctcgaagtttattattgatattaaagcagcatcaagcaaaattcgaaca |
3013865 |
T |
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| Q |
232 |
tgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttctctgctgcttc |
325 |
Q |
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| T |
3013864 |
tgttgtcttgaataattacacaaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttctttgatgcttc |
3013771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 115
Target Start/End: Complemental strand, 182337 - 182276
Alignment:
| Q |
54 |
ttgttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgca |
115 |
Q |
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| T |
182337 |
ttgttacctcgaataccacccagaagcttggtttttccagtgttgacatcacctatgatgca |
182276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3014051 - 3014089
Alignment:
| Q |
1 |
cccatttttcagcacattttccttctgttgatgctgaaa |
39 |
Q |
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| T |
3014051 |
cccatttttcagcacattttcctgctggtgatgctgaaa |
3014089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 57 - 163
Target Start/End: Original strand, 40672663 - 40672775
Alignment:
| Q |
57 |
ttacctcgaatacaaccgagaagcgtggttttgccagtgtacgcatcacctatgatgcaagaaacaggtttccgattact------cggtggcttaacag |
150 |
Q |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||| ||| |||||||||| |
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| T |
40672663 |
ttacctcgaatacaaccgagaagcatggttttgccagtgtatgcatcacctatgatgcaggaaacaggtttccgataactaggcggcggcggcttaacag |
40672762 |
T |
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| Q |
151 |
tatcacctggaaa |
163 |
Q |
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| T |
40672763 |
tatcacctggaaa |
40672775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 40672796 - 40672856
Alignment:
| Q |
252 |
caaaattcaagcataataataataatcaatcgattttagttaccattacctttattcatcttct |
315 |
Q |
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| T |
40672796 |
caaaattcaagcataa---taataatcaatcgattttagttatcattaccttcattcatcttct |
40672856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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