View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_43 (Length: 262)
Name: NF19297_high_43
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_43 |
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Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 41 - 246
Target Start/End: Complemental strand, 42037072 - 42036867
Alignment:
| Q |
41 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaatttggtttccatc |
140 |
Q |
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| T |
42037072 |
cactccactcccgttggtcatggcttaggagaatcacttcttaaacgacaagcaagaatcaatgatgcatgttccttactcattcaattcggtttccatc |
42036973 |
T |
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| Q |
141 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcgagccaattacttccataacagatttggagga |
240 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42036972 |
aagggatttttaccatcaacaatcttcttagccaaggctacaccgacgatgactttctggagcttatcaagccaattacttccataacagatttggagga |
42036873 |
T |
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| Q |
241 |
attaag |
246 |
Q |
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|||||| |
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| T |
42036872 |
attaag |
42036867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35589017 - 35589056
Alignment:
| Q |
1 |
ttgtaactaattgtgagatattctagtttagtcgataaca |
40 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
35589017 |
ttgtaactaattgtgagatattctagtttagtcgataaca |
35589056 |
T |
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