View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_55 (Length: 247)
Name: NF19297_high_55
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_55 |
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| [»] scaffold0768 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 12 - 230
Target Start/End: Original strand, 6843600 - 6843818
Alignment:
| Q |
12 |
tatcgtcgtgtcatttggtaacaatgtaatttgatggaatcaaagtgcatgaatgtgatgtctccattgttatatttgtatcttccgaaccatgtgagct |
111 |
Q |
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| T |
6843600 |
tatcgtcgtgtcatttggtaacaatgtaatttgatggaatcaaagtgcatgaatgtgatgtctccattgttatatttgtatcttccgaaccatgtgagct |
6843699 |
T |
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| Q |
112 |
gtgtcttgatttgaaacaaaattaaactcaattgatatgaatcttgatacatgtattgttgaatcatttgttataagcagtttgatgtgtatgtgagacg |
211 |
Q |
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| T |
6843700 |
gtgtcttgatttgaaacaaaattaaactcaattgatatgaatcttgatacatgtattgttgaatcatttgttataagcagtttgatgtgtatgtgagacg |
6843799 |
T |
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| Q |
212 |
atggttacctagatattac |
230 |
Q |
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| T |
6843800 |
atggttacctagatattac |
6843818 |
T |
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Target: scaffold0768 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0768
Description:
Target: scaffold0768; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 184
Target Start/End: Complemental strand, 3664 - 3625
Alignment:
| Q |
145 |
gatatgaatcttgatacatgtattgttgaatcatttgtta |
184 |
Q |
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| T |
3664 |
gatatgaatcttgatccatgtattgttgaatcatttgtta |
3625 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 1241813 - 1241775
Alignment:
| Q |
146 |
atatgaatcttgatacatgtattgttgaatcatttgtta |
184 |
Q |
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| T |
1241813 |
atatgaattttgatccatgtattgttgaatcatttgtta |
1241775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 7813677 - 7813639
Alignment:
| Q |
146 |
atatgaatcttgatacatgtattgttgaatcatttgtta |
184 |
Q |
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| T |
7813677 |
atatgaattttgatccatgtattgttgaatcatttgtta |
7813639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Complemental strand, 31773578 - 31773540
Alignment:
| Q |
146 |
atatgaatcttgatacatgtattgttgaatcatttgtta |
184 |
Q |
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| T |
31773578 |
atatgaattttgatccatgtattgttgaatcatttgtta |
31773540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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