View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_74 (Length: 205)
Name: NF19297_high_74
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_74 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 16 - 189
Target Start/End: Complemental strand, 12141705 - 12141532
Alignment:
| Q |
16 |
gaagatagacatacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttct |
115 |
Q |
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| T |
12141705 |
gaagatagacatacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttct |
12141606 |
T |
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| Q |
116 |
tcatagtctctttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgt |
189 |
Q |
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| T |
12141605 |
tcatagtctctttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgt |
12141532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 3e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 27 - 180
Target Start/End: Complemental strand, 9036636 - 9036483
Alignment:
| Q |
27 |
tacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctct |
126 |
Q |
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| T |
9036636 |
tacaaaaccataacctttagatcttccagtatacttatcagtgataacaacagcttctaagatctctccaaattgttcaaaatacattctcattgtttcc |
9036537 |
T |
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| Q |
127 |
ttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtca |
180 |
Q |
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| T |
9036536 |
ctttgagtttcccaagctaaccctccaacaaataatttggtaaatgttgtgtca |
9036483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 192
Target Start/End: Complemental strand, 26613641 - 26613471
Alignment:
| Q |
22 |
agacatacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatag |
121 |
Q |
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| T |
26613641 |
agacatacaaatccgtatcctttagattttcctgtgttcttatcagtgataatgacagcttcaagtatgtcaccaaattgttcaaaatatgttctcattt |
26613542 |
T |
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| Q |
122 |
tctctttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaaattgtgat |
192 |
Q |
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| T |
26613541 |
catcagttggagtttcccaagctagtcctccaacaaaaaccttagtgaatgttgtgtctccaaattgtgat |
26613471 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 184
Target Start/End: Complemental strand, 42251689 - 42251532
Alignment:
| Q |
27 |
tacaaatccatagcctttggatcttccagtggctttgtcagtgataacaacagcttccaagatctcaccaaattgctcaaaatacttcttcatagtctct |
126 |
Q |
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|||||| ||||| ||||| ||| ||||||||| | |||||||||| ||||||||||| || || |||||||| || ||||| || || | || ||| |
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| T |
42251689 |
tacaaagccatatccttttgattttccagtggttctgtcagtgatgacaacagcttctaaaatatcaccaaactgatcaaagtaacgtttgagtgtgtct |
42251590 |
T |
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| Q |
127 |
ttttgagtttcccaagccaatcctccaacaaaaactttggtgtaagttgtgtcaccaa |
184 |
Q |
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||| || |||||||| || ||||||||||||| || || |||||||||||||||| |
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| T |
42251589 |
cttttggtctcccaagctaaccctccaacaaaaatcttcgtataagttgtgtcaccaa |
42251532 |
T |
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