View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_high_77 (Length: 202)
Name: NF19297_high_77
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_high_77 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 1e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 1e-70
Query Start/End: Original strand, 9 - 163
Target Start/End: Complemental strand, 20099910 - 20099756
Alignment:
| Q |
9 |
acatcatcaatctttgaatgctccggtaaggccagcttatacacaactgataaaatgcgcttcagaactaagtaaggtccgtaaaagcgcttggagagct |
108 |
Q |
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| T |
20099910 |
acattatcaatcttagaatgcttcggtaaggccagcttatacacaactgataaaatgcgctccagaactaagtaaggtccgtaaaagcgcttggagagct |
20099811 |
T |
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| Q |
109 |
tctgataacgctcactagacaatgaggactgcctatacggcagaagcttaacata |
163 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
20099810 |
tctgataacgctcactagacaatgaggactgcctatacggcaaaagcttaacata |
20099756 |
T |
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Target: chr4 (Bit Score: 123; Significance: 2e-63; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 17 - 187
Target Start/End: Complemental strand, 9489260 - 9489092
Alignment:
| Q |
17 |
aatctttgaatgctccggtaaggccagcttatacacaactgataaaatgcgcttcagaactaagtaaggtccgtaaaagcgcttggagagcttctgataa |
116 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||||||||||||||| |||||| |
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| T |
9489260 |
aatcttagaatgctccggtaaggccagcttatacacaactgatcaaatgcgctctaaaactaagtaaggtccgtaaaagcgcttggagagctt-tgataa |
9489162 |
T |
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| Q |
117 |
cgctcactagacaatgaggactgcctatacggcagaagcttaacatacacccatattttgtctaaaaactg |
187 |
Q |
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|||||||||||||||||||||| |||||||||| ||||| |||||||||||||||| |||||||||||||| |
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| T |
9489161 |
cgctcactagacaatgaggacttcctatacggccgaagc-taacatacacccatatattgtctaaaaactg |
9489092 |
T |
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