View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_1 (Length: 598)
Name: NF19297_low_1
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 492; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 597
Target Start/End: Original strand, 45071707 - 45072299
Alignment:
| Q |
1 |
tccttcgtcagctcaatattttatttggtttgnnnnnnncttcttaaaggtccactagttttttaatgggaagagtatttagtaggtttaccataatttg |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45071707 |
tccttcgtcagctcaatattttatttggtttgtttttttcttcttaaaggtccactagttttttaatgggaagagtatttagtaggtttaccataatttg |
45071806 |
T |
|
| Q |
101 |
tcctaaggctctatacctggacaaaggtgaaaaatctcacatcactcatggtcttgacttcttgtaacattaattggccctagcatgacattggcttctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
45071807 |
tcctaaggctctatacctggacaaaggtgaaaaatctcacatcactcatggtcttgacttcttgtaacattaattggctctagcatgacattggcttctt |
45071906 |
T |
|
| Q |
201 |
cccatgctacaaccttgaaggctcccttttattgcatgtatgtttgtgggcgttgcgagaagaacaaaatcagatagtactgtaataaataagaacttca |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45071907 |
cccatgctacaaccttgaaggctcccttttattgcatgtatgtttgtgggcgttgcgagaagaacaaaatcagata-----gtaataaataagaacttca |
45072001 |
T |
|
| Q |
301 |
taatgagatataattaatcacaactaatagaaccatatactataacaaaagtcc-nnnnnnnnnnnnnnntggacaaatcaaaacataattcataacgtt |
399 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
45072002 |
taatgagatataattaatcacaactaatagaaccatatactataacaaaagtccaaaaaaaaaaaaaaaatggacaaatcaaaacataattcataacgtt |
45072101 |
T |
|
| Q |
400 |
gacagttgctacactacacatgcttgaaaagataaacaattgctgattttcttggcaatttccaaaagctcccctctagtttttaatctctttgacttgc |
499 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45072102 |
gaaagttgctacactacacatgcttgaaaagataaacaattgctgattttcttagcaatttccaaaagctcccctctagtttttaatctctttgacttgc |
45072201 |
T |
|
| Q |
500 |
ttggcaaatgattcgaatttgatacgatggagatgtgcctcccaacttttcattttctcaactttgcgtaagcacatgagatcaagacatattcttcg |
597 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45072202 |
ttggcaaatgattcgaatttgatacgatggagatgtgcctcccaacttttcattttctcaactttgcgtaagcacatgagatcaagacatattcttcg |
45072299 |
T |
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