View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_10 (Length: 421)
Name: NF19297_low_10
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 18 - 413
Target Start/End: Complemental strand, 5162619 - 5162224
Alignment:
| Q |
18 |
gctgcagggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggatatgatatgacgacaaagatg |
117 |
Q |
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| T |
5162619 |
gctgccgggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggatatgatatgacgacaaagatg |
5162520 |
T |
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| Q |
118 |
gtaacagaagttgtatgcaacttaatcggaaatcgctgctattggattcaacaacatggtttcaatacaaaaggatgaaagaaaccacaaataataagag |
217 |
Q |
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| T |
5162519 |
gtaacagaagttgtatgcaacttaatcggaaatcgctgctattggattcaacaacatggtttcaatacaaaaggatgaaagaaaccacaaataataagag |
5162420 |
T |
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| Q |
218 |
atttgataataatacgtgttacaataaactaacatcattctcatacttagtcgaggtccagtactaagataattgataacataattaactagtacaagtg |
317 |
Q |
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| T |
5162419 |
atttgataataatacgtgttacaataaactaacatcattctcatacttagtcgaggtccagtactaagataattgataacataattaactagtacaagtg |
5162320 |
T |
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| Q |
318 |
tacaagtacaaccacatttcaatgagactattaacatgatattaagttcataatgaagtcttcaatatttctgagtctgcataattttgatattct |
413 |
Q |
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| T |
5162319 |
tacaagtacaaccacatttcaatgagactattaacatgatattaagttcataatgaagtcttcaatatttctgagtctgcataattttgatattct |
5162224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 5184451 - 5184372
Alignment:
| Q |
18 |
gctgcagggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggat |
97 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5184451 |
gctgccgggtcaatggctgcagaacgtcatttgatggatctttgaaacaggtctcagagctatttgaggaactcttggat |
5184372 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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