View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_11 (Length: 421)
Name: NF19297_low_11
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 10 - 405
Target Start/End: Original strand, 45512181 - 45512583
Alignment:
| Q |
10 |
aatatgaaagactttctcctctcaataggtaatctctttgttttcaattgattataccaaaacaaggggaaaattacactaaccaccctaagttctaacc |
109 |
Q |
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| T |
45512181 |
aatatgaaagactttctcctctcaataggtaatctctttgttttcaattgattataccaaaacaacggaaaaatgacactaaccaccctaagttctaacc |
45512280 |
T |
|
| Q |
110 |
aagtgtcactcacctcccctctattttttcaaaagactttgacctcccctcacactaactccgtttaat---caccgtttgaagaacaacnnnnnnntct |
206 |
Q |
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| T |
45512281 |
aagtgtcactcacctcccctctattttttcaaaagactttgacctcccctcacactaactccgtttaataatcaccgtttgaagaacaacaaaaaaacct |
45512380 |
T |
|
| Q |
207 |
tccattctcaatatttgtttttatatgaacatcacttccatttttcctgcaattgtttgatgaaaaaataagtatgtccaatttcttaattcgcaatgag |
306 |
Q |
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| T |
45512381 |
tccattctcaatatttgtttttatatgaacagcacttccatttttcctgcaattgtttgatgaagaaataagtatgtccaatttcttaattcgcaatgag |
45512480 |
T |
|
| Q |
307 |
acttaccaatcttatcat----gaagatcccattctatggtggaacggatacaataccaaaccctacctaatttttaagatcaaggaacattgtgtaact |
402 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
45512481 |
acttaccaatcttatcatgatcgaagatcccattctatggtggaacggatacaataccaaaccctacctaatttttaagatcaaggaacattgtgtgact |
45512580 |
T |
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| Q |
403 |
atg |
405 |
Q |
| |
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| T |
45512581 |
atg |
45512583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 79 - 341
Target Start/End: Original strand, 35744002 - 35744272
Alignment:
| Q |
79 |
aaaattacactaaccaccctaagttctaaccaagtgtcactcacctcccctctattttttcaaaagactttgacctcccctcacactaactccgtttaat |
178 |
Q |
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||||||||| ||||| || |||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||| |
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| T |
35744002 |
aaaattacattaacctcctctagttctaaccaaatatcactcacctcccctctattttttaaaaagacattgacctcccctcacactacctctgtttaat |
35744101 |
T |
|
| Q |
179 |
caccgtttgaagaacaacnnnnnnntcttccattctcaat-atttgtttttatatgaacatcacttccatttttcc--------tgcaattgtttgatga |
269 |
Q |
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|||| |||||||||||| ||||||||||| || | || |||||| || |||||||||||||||||||| ||| |||| ||||||| |
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| T |
35744102 |
caccctttgaagaacaaaagaaaaaccttccattctcgatcaattttttttacataaacatcacttccatttttccgtttgaagtgccattgcttgatga |
35744201 |
T |
|
| Q |
270 |
aaaaataagtatgtccaatttcttaattcgcaatgagacttaccaatcttatcatgaagatcccattctatg |
341 |
Q |
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| T |
35744202 |
agaaataag-atgtccattttcttaattcgcaatgagacttaccaatcttgtcatgaagatcccattctatg |
35744272 |
T |
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