View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19297_low_12 (Length: 417)

Name: NF19297_low_12
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19297_low_12
NF19297_low_12
[»] chr8 (18 HSPs)
chr8 (10-254)||(41828746-41828989)
chr8 (322-417)||(41829032-41829127)
chr8 (208-299)||(5180953-5181044)
chr8 (23-130)||(34666848-34666955)
chr8 (58-127)||(27322488-27322555)
chr8 (161-213)||(33114228-33114280)
chr8 (167-199)||(39852849-39852881)
chr8 (161-200)||(7818481-7818520)
chr8 (161-200)||(35237266-35237305)
chr8 (165-200)||(37532583-37532618)
chr8 (161-199)||(38778835-38778873)
chr8 (166-200)||(41761806-41761840)
chr8 (161-199)||(43481321-43481359)
chr8 (161-199)||(43591015-43591053)
chr8 (166-207)||(10199098-10199139)
chr8 (166-207)||(38573095-38573136)
chr8 (167-199)||(35237909-35237941)
chr8 (167-199)||(37533323-37533355)
[»] chr4 (20 HSPs)
chr4 (10-207)||(45772163-45772360)
chr4 (10-207)||(45778579-45778773)
chr4 (10-139)||(45772890-45773019)
chr4 (75-152)||(38709561-38709637)
chr4 (58-105)||(55874644-55874691)
chr4 (259-299)||(24549881-24549921)
chr4 (161-200)||(199266-199305)
chr4 (161-200)||(388760-388799)
chr4 (208-299)||(35603122-35603213)
chr4 (161-200)||(40847684-40847723)
chr4 (77-152)||(52870072-52870146)
chr4 (161-199)||(199007-199045)
chr4 (166-200)||(2713888-2713922)
chr4 (166-200)||(18501746-18501780)
chr4 (161-199)||(20075533-20075571)
chr4 (161-199)||(20422139-20422177)
chr4 (165-199)||(26423767-26423801)
chr4 (161-199)||(36111256-36111294)
chr4 (161-199)||(55816490-55816528)
chr4 (166-199)||(389450-389483)
[»] chr7 (13 HSPs)
chr7 (73-190)||(23632940-23633054)
chr7 (74-152)||(39146846-39146921)
chr7 (77-152)||(85005-85079)
chr7 (161-200)||(27855573-27855612)
chr7 (259-298)||(41555260-41555299)
chr7 (161-207)||(4270176-4270222)
chr7 (161-199)||(19816272-19816310)
chr7 (161-199)||(24044083-24044121)
chr7 (161-199)||(34853399-34853437)
chr7 (161-199)||(36683504-36683542)
chr7 (161-199)||(42456556-42456594)
chr7 (167-200)||(34854042-34854075)
chr7 (168-200)||(42455928-42455960)
[»] chr5 (8 HSPs)
chr5 (74-149)||(6903185-6903257)
chr5 (58-129)||(4790119-4790188)
chr5 (77-200)||(39149390-39149510)
chr5 (161-200)||(3957507-3957546)
chr5 (161-198)||(25075037-25075074)
chr5 (161-198)||(25133006-25133043)
chr5 (168-200)||(26688096-26688128)
chr5 (168-200)||(26957827-26957859)
[»] chr1 (4 HSPs)
chr1 (55-190)||(29148957-29149090)
chr1 (161-199)||(42839709-42839747)
chr1 (166-200)||(49534441-49534475)
chr1 (166-199)||(8560787-8560820)
[»] chr3 (13 HSPs)
chr3 (255-292)||(44808427-44808464)
chr3 (161-199)||(41459138-41459176)
chr3 (72-127)||(1127444-1127499)
chr3 (161-200)||(3944902-3944941)
chr3 (77-152)||(41040628-41040702)
chr3 (161-199)||(19555966-19556004)
chr3 (166-200)||(23584928-23584962)
chr3 (166-200)||(23599751-23599785)
chr3 (161-199)||(25025804-25025842)
chr3 (161-199)||(44868658-44868696)
chr3 (161-199)||(50674637-50674675)
chr3 (166-200)||(53269393-53269427)
chr3 (161-199)||(55281843-55281881)
[»] chr2 (15 HSPs)
chr2 (161-200)||(12206795-12206834)
chr2 (218-299)||(353504-353584)
chr2 (161-200)||(4387000-4387039)
chr2 (161-200)||(9224273-9224312)
chr2 (161-200)||(16571125-16571164)
chr2 (73-152)||(17947851-17947928)
chr2 (161-199)||(6849296-6849334)
chr2 (161-199)||(7583140-7583178)
chr2 (161-199)||(10883295-10883333)
chr2 (161-207)||(14565214-14565260)
chr2 (166-200)||(20244216-20244250)
chr2 (161-199)||(28224428-28224466)
chr2 (166-199)||(16887591-16887624)
chr2 (167-200)||(28223795-28223828)
chr2 (259-299)||(22898123-22898163)
[»] chr6 (2 HSPs)
chr6 (161-200)||(13936680-13936719)
chr6 (161-200)||(30611385-30611424)


Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 10 - 254
Target Start/End: Original strand, 41828746 - 41828989
Alignment:
Q  10 caacttgatgaagatggattgtagtctcttgctagtagtgaacatcatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtggg 109  Q
    ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41828746 caacttgatgaagatggattgtagtctcttgctagtagt-aacaacatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtggg 41828844  T
Q  110 cagaccatcgtaaaatctatgatcctcttttaatctaatggtacnnnnnnntttctcatggtgggaaaggattaacctttctcatgtgaaactccaccgt 209  Q
    ||||| |||||||||||||||||||| |||||||||||||||||       ||||||||| ||| ||| |||||||||||||||||||||||||||||||    
T  41828845 cagacaatcgtaaaatctatgatcctattttaatctaatggtacaaaaaactttctcatgatggaaaaagattaacctttctcatgtgaaactccaccgt 41828944  T
Q  210 aaattagcaagcctattcccacttgtctttgactaataacccaat 254  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||    
T  41828945 aaattagcaagcctactcccacttgtctttgagtaataacccaat 41828989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 322 - 417
Target Start/End: Original strand, 41829032 - 41829127
Alignment:
Q  322 aaacaaaaaacatgtttccttagtatctgttgtgtatactaaagcattccatgnnnnnnnacacaacttctgaaacgaaaccatcaccagaataat 417  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| ||||||    
T  41829032 aaacaaaaaacatgtttccttagtatttgttgtgtatactaaagcattccatgtttttttacacaacttctgaaacgaaaccatcaccataataat 41829127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 208 - 299
Target Start/End: Original strand, 5180953 - 5181044
Alignment:
Q  208 gtaaattagcaagcctattcccacttgtctttgactaataacccaattctttctatttaaattatgttattagtaaaggataaatttgtaaa 299  Q
    |||| |||||||||||| |||||||||||||  || || ||||||||||| |||||||||| ||||| |||||||||||||| |||||||||    
T  5180953 gtaagttagcaagcctactcccacttgtcttctaccaaaaacccaattctatctatttaaactatgtaattagtaaaggatatatttgtaaa 5181044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 34666955 - 34666848
Alignment:
Q  23 atggattgtagtctcttgctagtagtgaacatcatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaa 122  Q
    |||||||||||||||||  | || |||||   || | |||||||||||| ||||||||||||||||| |||||||||||| ||| |||| |||||| |||    
T  34666955 atggattgtagtctcttagtggtggtgaattgcagagttgcattctcacaaggttgaagatgatgagtggaaaatatataatgtaggcataccatcataa 34666856  T
Q  123 aatctatg 130  Q
    ||||||||    
T  34666855 aatctatg 34666848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 27322488 - 27322555
Alignment:
Q  58 atttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatct 127  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||| |   ||| ||||||||||||    
T  27322488 atttgcattctca--aggttgaagatgatgtggggaaaatatatagtgttgattgactatcgtaaaatct 27322555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 161 - 213
Target Start/End: Original strand, 33114228 - 33114280
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaactccaccgtaaat 213  Q
    |||| ||||||||||||||||||||||||| |||||||||  |||||| ||||    
T  33114228 tttcccatggtgggaaaggattaacctttcccatgtgaaatgccaccgaaaat 33114280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 39852849 - 39852881
Alignment:
Q  167 atggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||||||||||||||||||||||||    
T  39852849 atggtgggaaaggattaacctttctcatgtgaa 39852881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 7818520 - 7818481
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  7818520 tttcccatggtgggaaaggattaacctttcccatgtgaaa 7818481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 35237305 - 35237266
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  35237305 tttcccatggtgggaaaggattaacctttcccatgtgaaa 35237266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 165 - 200
Target Start/End: Complemental strand, 37532618 - 37532583
Alignment:
Q  165 tcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||||||||||||||||||||||||| |||||||||    
T  37532618 tcatggtgggaaaggattaacctttcccatgtgaaa 37532583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 38778835 - 38778873
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||| |||| |||||||||||||||||||||    
T  38778835 tttctcatggtgagaaatgattaacctttctcatgtgaa 38778873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 41761840 - 41761806
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  41761840 catggtgggaaaggattaacctttcccatgtgaaa 41761806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 43481321 - 43481359
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| |||||||||||||||||||||||| |||||||||    
T  43481321 tttcccatggtgggaaaggattaacctttttcatgtgaa 43481359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 43591053 - 43591015
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  43591053 tttcccatggtgggaaaggattaacctttcccatgtgaa 43591015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 10199098 - 10199139
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||    
T  10199098 catggtgggaaaggattcacctttcccatgttaaactccacc 10199139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 207
Target Start/End: Original strand, 38573095 - 38573136
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    ||||||||||||||||| ||||||| ||||| ||||||||||    
T  38573095 catggtgggaaaggattcacctttcccatgttaaactccacc 38573136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 35237909 - 35237941
Alignment:
Q  167 atggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||||||||||||||| ||||||||    
T  35237909 atggtgggaaaggattaacctttcccatgtgaa 35237941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 37533323 - 37533355
Alignment:
Q  167 atggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||||||||||||||| ||||||||    
T  37533323 atggtgggaaaggattaacctttcccatgtgaa 37533355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 10 - 207
Target Start/End: Complemental strand, 45772360 - 45772163
Alignment:
Q  10 caacttgatgaagatggattgtagtctcttgctagtagtgaacatcatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtggg 109  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  45772360 caacttgatgaagatggattgtagtctcttgctagtagtgaacaacatatttgcattctcatgaggttgaagatgatgaggggaaaatatatagtgtggg 45772261  T
Q  110 cagaccatcgtaaaatctatgatcctcttttaatctaatggtacnnnnnnntttctcatggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    ||||||||||||||||||||| ||||||||||||||||||||||       ||||| |||||||||||||||||||||||  ||||||||||||||||    
T  45772260 cagaccatcgtaaaatctatgctcctcttttaatctaatggtacaaaaaactttcttatggtgggaaaggattaaccttttccatgtgaaactccacc 45772163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 10 - 207
Target Start/End: Original strand, 45778579 - 45778773
Alignment:
Q  10 caacttgatgaagatggattgtagtctcttgctagtagtgaacatcatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtggg 109  Q
    ||||||||||||||||| ||||||||||||| |  ||||||||| || ||||||||||| ||||||||||||||||||||||||| ||||||||||||||    
T  45778579 caacttgatgaagatgggttgtagtctcttggt--tagtgaacagcaaatttgcattcttacgaggttgaagatgatgaggggaagatatatagtgtggg 45778676  T
Q  110 cagaccatcgtaaaatctatgatcctcttttaatctaatggtacnnnnnnntttctcatggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    ||||||||||||||||||||| |||||||||||||||||||||        ||||| |||||||||||||||||||||||| ||||||||||||||||    
T  45778677 cagaccatcgtaaaatctatgctcctcttttaatctaatggtaaaaaaaactttct-atggtgggaaaggattaacctttcccatgtgaaactccacc 45778773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 45772890 - 45773019
Alignment:
Q  10 caacttgatgaagatggattgtagtctcttgctagtagtgaacatcatatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtggg 109  Q
    ||||||||||||||||||||||||||||||| | || || ||   || ||||||||| ||| |||| |||||||||||||||||||||||||||||| ||    
T  45772890 caacttgatgaagatggattgtagtctcttggtggtggtaaattgcagatttgcattttcatgaggctgaagatgatgaggggaaaatatatagtgtagg 45772989  T
Q  110 cagaccatcgtaaaatctatgatcctcttt 139  Q
    ||||| || |||||||| ||| || |||||    
T  45772990 cagactatggtaaaatccatgctcttcttt 45773019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 38709561 - 38709637
Alignment:
Q  75 gttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    |||||||||||||| |||||| ||||||||||||   ||||||| ||||||||||| | ||| |||||||||||||||    
T  38709561 gttgaagatgatgatgggaaagtatatagtgtggattgaccatcataaaatctatgtttctc-tttaatctaatggta 38709637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 105
Target Start/End: Original strand, 55874644 - 55874691
Alignment:
Q  58 atttgcattctcacgaggttgaagatgatgaggggaaaatatatagtg 105  Q
    ||||||||| ||| | ||||||||||||||||||||||||||||||||    
T  55874644 atttgcattttcatggggttgaagatgatgaggggaaaatatatagtg 55874691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 24549921 - 24549881
Alignment:
Q  259 tctatttaaattatgttattagtaaaggataaatttgtaaa 299  Q
    ||||||||| ||||||||||||||||||||||| |||||||    
T  24549921 tctatttaagttatgttattagtaaaggataaaattgtaaa 24549881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 199266 - 199305
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  199266 tttcccatggtgggaaaggattaacctttcccatgtgaaa 199305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 388799 - 388760
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  388799 tttcccatggtgggaaaggattaacctttcccatgtgaaa 388760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 208 - 299
Target Start/End: Complemental strand, 35603213 - 35603122
Alignment:
Q  208 gtaaattagcaagcctattcccacttgtctttgactaataacccaattctttctatttaaattatgttattagtaaaggataaatttgtaaa 299  Q
    |||| ||||||||| ||||||||||||  ||| || || ||| |||| |  ||||||| |||||||| ||||| ||||||||| ||||||||    
T  35603213 gtaagttagcaagcttattcccacttgctttttaccaaaaactcaataccatctattttaattatgtaattagaaaaggataattttgtaaa 35603122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 40847723 - 40847684
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  40847723 tttctcatggtgggaaaggattaaccttttccatgtgaaa 40847684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 52870072 - 52870146
Alignment:
Q  77 tgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    ||||||||||||||| |||||||||||||| |   ||||||| ||||||||||| || || | |||||||||||||    
T  52870072 tgaagatgatgagggaaaaatatatagtgtagattgaccatcataaaatctatgttcatc-tctaatctaatggta 52870146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 199045 - 199007
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  199045 tttcccatggtgggaaaggattaacctttcccatgtgaa 199007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 2713888 - 2713922
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  2713888 catggtgggaaaggattaacctttcccatgtgaaa 2713922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Complemental strand, 18501780 - 18501746
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  18501780 catggtgggaaaggattaacctttcccatgtgaaa 18501746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 20075571 - 20075533
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  20075571 tttcccatggtgggaaaggattaacctttcccatgtgaa 20075533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 20422177 - 20422139
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  20422177 tttcccatggtgggaaaggattaacctttcccatgtgaa 20422139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 165 - 199
Target Start/End: Complemental strand, 26423801 - 26423767
Alignment:
Q  165 tcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||||||||||||||||| ||||||||    
T  26423801 tcatggtgggaaaggattaacctttcccatgtgaa 26423767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 36111256 - 36111294
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  36111256 tttcccatggtgggaaaggattaacctttcccatgtgaa 36111294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 55816490 - 55816528
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  55816490 tttcccatggtgggaaaggattaacctttcccatgtgaa 55816528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 389450 - 389483
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaa 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  389450 catggtgggaaaggattaacctttcccatgtgaa 389483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 73 - 190
Target Start/End: Complemental strand, 23633054 - 23632940
Alignment:
Q  73 aggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggtacnnnnnnntttctcatggtg 172  Q
    |||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||  ||||| |||||||||||||||        |||  |||||||    
T  23633054 aggttgaagatgatgaggggaaaataaa--gtgtgggcagaccatcataaaatctatactcctc-tttaatctaatggtaaaaaaaacttttccatggtg 23632958  T
Q  173 ggaaaggattaacctttc 190  Q
    ||||||||||| ||||||    
T  23632957 ggaaaggattagcctttc 23632940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 39146921 - 39146846
Alignment:
Q  74 ggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    ||||||||||||||||||||||  ||| ||||||||||||| ||| ||||||||||  ||||| |||||||||||||||    
T  39146921 ggttgaagatgatgaggggaaa--ataaagtgtgggcagactatcataaaatctatactcctc-tttaatctaatggta 39146846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 85005 - 85079
Alignment:
Q  77 tgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    ||||||||||||||| |||||||||||||| ||  ||||||| ||||||||||| || || | |||||||||||||    
T  85005 tgaagatgatgagggaaaaatatatagtgtaggttgaccatcataaaatctatgttcatc-tctaatctaatggta 85079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 27855612 - 27855573
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||| |||||||||||| |||||||||    
T  27855612 tttctcatggtgggaaatgattaacctttcccatgtgaaa 27855573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 41555299 - 41555260
Alignment:
Q  259 tctatttaaattatgttattagtaaaggataaatttgtaa 298  Q
    ||||||||| ||||||||||||||||||||||||| ||||    
T  41555299 tctatttaagttatgttattagtaaaggataaattcgtaa 41555260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 4270222 - 4270176
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||    
T  4270222 tttcccatggtgggaaaggattcacctttcccatgttaaactccacc 4270176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 19816310 - 19816272
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  19816310 tttcccatggtgggaaaggattaacctttcccatgtgaa 19816272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 24044083 - 24044121
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  24044083 tttcccatggtgggaaaggattaacctttcccatgtgaa 24044121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 34853437 - 34853399
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  34853437 tttcccatggtgggaaaggattaacctttcccatgtgaa 34853399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 36683504 - 36683542
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  36683504 tttcccatggtgggaaaggattaacctttcccatgtgaa 36683542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 42456556 - 42456594
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  42456556 tttcccatggtgggaaaggattaacctttcccatgtgaa 42456594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 34854042 - 34854075
Alignment:
Q  167 atggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||||||||||||||||||||||| |||||||||    
T  34854042 atggtgggaaaggattaacctttcccatgtgaaa 34854075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 42455960 - 42455928
Alignment:
Q  168 tggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||| |||||||||    
T  42455960 tggtgggaaaggattaacctttcccatgtgaaa 42455928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 74 - 149
Target Start/End: Original strand, 6903185 - 6903257
Alignment:
Q  74 ggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatg 149  Q
    ||||||||||||||||||||||||| |  |||||||||||||||| ||||||||||  ||||| ||||||||||||    
T  6903185 ggttgaagatgatgaggggaaaataaa--gtgtgggcagaccatcataaaatctatactcctc-tttaatctaatg 6903257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 58 - 129
Target Start/End: Original strand, 4790119 - 4790188
Alignment:
Q  58 atttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctat 129  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||| |  |||| ||| ||||||||||    
T  4790119 atttgcattctca--aggttgaagatgatgtggggaaaatatatagtgttgatagactatcataaaatctat 4790188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 39149390 - 39149510
Alignment:
Q  77 tgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggt-acnnnnnnntttctcatggtggga 175  Q
    ||||||||||||||| |||||||||||||| |   ||||||| ||||||||||| || || | |||||||||||| |        |||| ||||||||||    
T  39149390 tgaagatgatgagggaaaaatatatagtgtag---gaccatcataaaatctatgttcatc-tctaatctaatggtaaaaaaaaactttcccatggtggga 39149485  T
Q  176 aaggattaacctttctcatgtgaaa 200  Q
    ||||||| ||||||| |||||||||    
T  39149486 aaggattcacctttcccatgtgaaa 39149510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 3957546 - 3957507
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  3957546 tttcccatggtgggaaaggattaacctttcccatgtgaaa 3957507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 25075037 - 25075074
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtga 198  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  25075037 tttcccatggtgggaaaggattaacctttcccatgtga 25075074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 198
Target Start/End: Original strand, 25133006 - 25133043
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtga 198  Q
    |||| ||||||||||||||||||||||||| |||||||    
T  25133006 tttcccatggtgggaaaggattaacctttcccatgtga 25133043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 26688096 - 26688128
Alignment:
Q  168 tggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||| |||||||||    
T  26688096 tggtgggaaaggattaacctttcccatgtgaaa 26688128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 168 - 200
Target Start/End: Original strand, 26957827 - 26957859
Alignment:
Q  168 tggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||| |||||||||    
T  26957827 tggtgggaaaggattaacctttcccatgtgaaa 26957859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 29149090 - 29148957
Alignment:
Q  55 catatttgcattctcacgaggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta-c 153  Q
    |||||||||||| ||||||||||||||||||||||||  ||| |||||| || ||| ||||||  |||||| |||| | ||| |||||||||||||||      
T  29149090 catatttgcattttcacgaggttgaagatgatgaggg--aaaaatatagcgtaggctgaccatgataaaatttatgttgctc-tttaatctaatggtagg 29148994  T
Q  154 nnnnnnntttctcatggtgggaaaggattaacctttc 190  Q
           |||| |||||||||||||||||||||||||    
T  29148993 aaaaaactttcccatggtgggaaaggattaacctttc 29148957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 42839747 - 42839709
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  42839747 tttcccatggtgggaaaggattaacctttcccatgtgaa 42839709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 49534441 - 49534475
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  49534441 catggtgggaaaggattaacctttcccatgtgaaa 49534475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 8560787 - 8560820
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaa 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  8560787 catggtgggaaaggattaacctttcccatgtgaa 8560820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 292
Target Start/End: Original strand, 44808427 - 44808464
Alignment:
Q  255 tctttctatttaaattatgttattagtaaaggataaat 292  Q
    ||||||||||||||||||||||||||||||||||||||    
T  44808427 tctttctatttaaattatgttattagtaaaggataaat 44808464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 41459176 - 41459138
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  41459176 tttctcatggtgggaaaggattaacctttcccatgtgaa 41459138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 72 - 127
Target Start/End: Complemental strand, 1127499 - 1127444
Alignment:
Q  72 gaggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatct 127  Q
    ||||||||||| |||| ||||||||||||| ||||||||||  ||| |||||||||    
T  1127499 gaggttgaagaagatgtggggaaaatatatggtgtgggcaggtcatggtaaaatct 1127444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 3944941 - 3944902
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  3944941 tttcccatggtgggaaaggattaacctttcccatgtgaaa 3944902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 77 - 152
Target Start/End: Complemental strand, 41040702 - 41040628
Alignment:
Q  77 tgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    ||||||| ||||||| |||||||||||||| ||  ||||||| ||||||||||| || || | |||||||||||||    
T  41040702 tgaagataatgagggaaaaatatatagtgtaggttgaccatcataaaatctatgttcatc-tctaatctaatggta 41040628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 19555966 - 19556004
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  19555966 tttcccatgatgggaaaggattaacctttctcatgtgaa 19556004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 23584928 - 23584962
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  23584928 catggtgggaaaggattaacctttcccatgtgaaa 23584962  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 23599751 - 23599785
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  23599751 catggtgggaaaggattaacctttcccatgtgaaa 23599785  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 25025804 - 25025842
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  25025804 tttcccatggtgggaaaggattaacctttcccatgtgaa 25025842  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 44868658 - 44868696
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  44868658 tttcccatggtgggaaaggattaacctttcccatgtgaa 44868696  T

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Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 50674675 - 50674637
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| |||||||||||| |||||||||||||||||||||    
T  50674675 tttcccatggtgggaaaagattaacctttctcatgtgaa 50674637  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 53269393 - 53269427
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  53269393 catggtgggaaaggattaacctttcccatgtgaaa 53269427  T

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Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 55281881 - 55281843
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  55281881 tttcccatggtgggaaaggattaacctttcccatgtgaa 55281843  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 12206834 - 12206795
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  12206834 tttctcatggtgggaaaggattaacctttcccatgtgaaa 12206795  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 299
Target Start/End: Original strand, 353504 - 353584
Alignment:
Q  218 aagcctattcccacttgtctttgactaataacccaattctttctatttaaattatgttattagtaaaggataaatttgtaaa 299  Q
    ||||||| |||||||||| ||| ||| | ||||||||| | || |||||| |||||| ||||| ||||||||||||||||||    
T  353504 aagcctactcccacttgtattttactgaaaacccaattttatccatttaagttatgtcattag-aaaggataaatttgtaaa 353584  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 4387000 - 4387039
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  4387000 tttcccatggtgggaaaggattaacctttcccatgtgaaa 4387039  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 9224312 - 9224273
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  9224312 tttcccatggtgggaaaggattaacctttcccatgtgaaa 9224273  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Complemental strand, 16571164 - 16571125
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  16571164 tttcccatggtgggaaaggattaacctttcccatgtgaaa 16571125  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 152
Target Start/End: Original strand, 17947851 - 17947928
Alignment:
Q  73 aggttgaagatgatgaggggaaaatatatagtgtgggcagaccatcgtaaaatctatgatcctcttttaatctaatggta 152  Q
    ||||||||||||||| | ||||||||||| |||||| ||||||||  |||||||||||  |||| |||||||| ||||||    
T  17947851 aggttgaagatgatg-gaggaaaatatatggtgtggacagaccattttaaaatctatgcacctc-tttaatcttatggta 17947928  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 6849334 - 6849296
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  6849334 tttcccatggtgggaaaggattaacctttcccatgtgaa 6849296  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 7583178 - 7583140
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    ||||||||||||||||||||||||||||||  |||||||    
T  7583178 tttctcatggtgggaaaggattaacctttccgatgtgaa 7583140  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Complemental strand, 10883333 - 10883295
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  10883333 tttcccatggtgggaaaggattaacctttcccatgtgaa 10883295  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 14565214 - 14565260
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaactccacc 207  Q
    |||| ||||||||||||||||| ||||||| ||||| ||||||||||    
T  14565214 tttcccatggtgggaaaggattcacctttcccatgttaaactccacc 14565260  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 200
Target Start/End: Original strand, 20244216 - 20244250
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaaa 200  Q
    ||||||||||||||||||||||||| |||||||||    
T  20244216 catggtgggaaaggattaacctttcccatgtgaaa 20244250  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 28224428 - 28224466
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaa 199  Q
    |||| ||||||||||||||||||||||||| ||||||||    
T  28224428 tttcccatggtgggaaaggattaacctttcccatgtgaa 28224466  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 199
Target Start/End: Complemental strand, 16887624 - 16887591
Alignment:
Q  166 catggtgggaaaggattaacctttctcatgtgaa 199  Q
    ||||||||||||||||||||||||| ||||||||    
T  16887624 catggtgggaaaggattaacctttcccatgtgaa 16887591  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 200
Target Start/End: Complemental strand, 28223828 - 28223795
Alignment:
Q  167 atggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||||||||||||||||||||||| |||||||||    
T  28223828 atggtgggaaaggattaacctttcccatgtgaaa 28223795  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 22898123 - 22898163
Alignment:
Q  259 tctatttaaattatgttattagtaaaggataaatttgtaaa 299  Q
    |||||||||| | | ||||||||||||||||||||||||||    
T  22898123 tctatttaaaatgtattattagtaaaggataaatttgtaaa 22898163  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 13936680 - 13936719
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| ||||||||||||||||||||||||| |||||||||    
T  13936680 tttcccatggtgggaaaggattaacctttcccatgtgaaa 13936719  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 161 - 200
Target Start/End: Original strand, 30611385 - 30611424
Alignment:
Q  161 tttctcatggtgggaaaggattaacctttctcatgtgaaa 200  Q
    |||| |||||||||||||||||||| ||||||||||||||    
T  30611385 tttcccatggtgggaaaggattaacatttctcatgtgaaa 30611424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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