View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19297_low_13 (Length: 416)
Name: NF19297_low_13
Description: NF19297
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19297_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 70 - 307
Target Start/End: Complemental strand, 7059880 - 7059643
Alignment:
| Q |
70 |
aggggaaaattattgttgtgtttatttagaagcgaaatcaattttattaaaaaagaacacaccacagggcataaggtatacaattatggggtgcagaaat |
169 |
Q |
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| T |
7059880 |
aggggaaaattattgttgtttttttttagaagcgaaatcaattttattaaaaaagaacacaccacagggcataaggtatacacttatggggtgcagaaat |
7059781 |
T |
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| Q |
170 |
gtaaaagaattgaaacaaacattttaaattgcaaaaacaacatcaattaatagcaggctgaaagtaaaaacatgtcattttctttgaaggataataggaa |
269 |
Q |
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| T |
7059780 |
gtacaagaattgaaacaagcattttaaatcgcaaaaataacatcaattaataccaggccgaaagtaaaaacatgtcattttctttgaaggataataggaa |
7059681 |
T |
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| Q |
270 |
aaactcaaaagtatgccaagaaaaccattcagaaaaat |
307 |
Q |
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| T |
7059680 |
aaactcaaaagtatgccaagaaaaccattcagaaaaat |
7059643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 303 - 403
Target Start/End: Complemental strand, 7059037 - 7058937
Alignment:
| Q |
303 |
aaaatttgaagtattttatcattttgttgcagaatcgcttttgtaattttctgtgaggtaatcataatgaagagagaaaggcataatcataaccaagaga |
402 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7059037 |
aaaatttgaagtattttatcattttgttgcagaatcgcttttgtaattttctgtgaggtaatcataatgaagagagaaaggcataatcataaccaagaga |
7058938 |
T |
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| Q |
403 |
a |
403 |
Q |
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| T |
7058937 |
a |
7058937 |
T |
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